Gene detail

Detailed information of HSymV2.0_g02.03375_t1 in Hydractinia symbiolongicarpus

Genomic Location: HiC_scaffold_2:19004103...19007255
NR annotation: XP_002155966.2, ras-related protein Rab-3C [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

HSymV2.0_g02.03375_t1

TTACATAAAATATTTACATGTTGTGAATTATTTGCGGTTAAAACTCAATCGTTTGAACACTTTTCATGTCTTTTCTCTCTTGTATATACATTGATGTTGTTGAAATGCTGTTTTTCTCATTGCTGGATGATAGGAGATGGAATTTCTTTGCAAAATGTACTAAAAAGTTTCGGAAAGCAAGAAAAAGTCTAAGAAAGTTGTAGTTGATTTATTTATTTTGTGTTTATCTCGTAATTACTTCACCAGGAGAAAGAGGAAAACAAAAAGAAGTTCTTGTGGCTTGAATACTTGTTTCCTCGCCCGGCTTGGTGTAAAATTATCTGCTACTAGAATTTACCAAAAGAGTATTAAATCCAGGTTTTGTAAACAGACTGAATTCAGACACAAATAAAGGGTATCACAGGCTAAATTTAATCACAAAACTCTGCTGTTACATATTCCCGTCTTTCCATGTTTTTTTAAACAGTTTATGAGTAGAATTACCATTTTGAAAAACAAAAAACAATTGGAAATGCTGGTGAATAATGTCTCTGGAATATAATCCAAAAAGCACCTTTGTTCGAaagagaagacggaataagagagaagaagaagaagaagaagaaataaaagaaTGTGATAAAGACATTGACATAATTGTGATTGGAAATAGAAATGTTGGAAAAACTAGTTTATTATTTCAATACGCAAACAAAATGCACACTGAAACTTACATACCTACCGTTGGATTTGACTATTTACAAAAGCTTATTCAGACATATGATGGTAACAAAGTTCGAGTGAAATTCTGGGACACATCTGGTGCTGAAGATGCGATGGAAAACATTGCTAAAAATATCTACAAATGCGCTTCAGGATTTATCGTGATGTATGACGTCACTGACATCCAATCATATAACGACGTGTATCACTGGATGAACCTGTTGGATGAATATTCCTTGAGCAATTCTTATGTCGTCATCATCGGCAACAAAAGCGATAGGAAAGAAGATCGCAAAATAAGCAAGGAAGAGGGCGTTGAATTGGCGGCGTGTTATGACGTCAAATTTATGGAAACTAGCGTCTTTCAAGATAAAAATATTAAAAAAACTTTAGTTCGAATGATAAGCAATATTGTTGATTAAAGAACAACGTATTTTAGTTTGATTGTCGAACTTTGTAAAACACGAATTATAGTTTGTTTGCCGAACCATTAAAAGTTTGTAAACAAACCCGCGAAACGAACAACTGATATTCTTCAGGACTCAGAGCAAAAAGAAAAAGTCTTGGCAACGAGGTAGAAATAACAATGAAATAAATTATATTTCTTGTCATGTAATGAAAATCGGTTTTCTTTTATAAAAAGAGATAAGTAATTGAAAATAAAAAACAGTGGCTAGCAAAATACCGTATAACCAAATGCCATGCATTTTTTGTTGTTTACAAGCTATGTACACACCTACGTAAATAAATAATTCTGAATAAACAATTATAATTTAAAAACCTTGTTGTTGTTTTGATCGATATATGACAGATGGCACCACGCCCATATTTCAACACTCAATTAGCAACGTCCCTAGTAGCGCTGCTATAAAAAATTTTAAACGCATGAGCGAGTCGGAGAAATATCACATTTTACAAATGAAAATTCGTTTTTAAAGCAAATGTTCCACACGCAACACACCTTCTTGTAAAAAAAAAGTAGTCTTAGTCAAATTCACAGAAAACATTTTAAATAATGGAAAATGCAAATTGTATCACGCATTTTTTCTCTTCACGAAATATGTAATTTGTAATTTATTTTAGCGGACGCCAGCAAAATATGAGTGAAGCAAGTGACTGGAATCTCACTTTTATCTCTGGAAAAGAATAAAAAAACTTGTTTTTTttaaatattttttttagtgccgaatgaagacctccaatacggaggtcgaaatattaccataaaaatatatatgctgaacgaccatgtatatgtttttttaaagtattaacatacgttcacatgaacatgtcatttaaagagtaagaaaagatATTTGTAAAAGAAAAAAAAGTTATTTGGC

Protein

Uniprot

Uniprot term	Description
P25228	Ras-related protein Rab-3 OS=Drosophila melanogaster OX=7227 GN=Rab3 PE=1 SV=1
P11023	Ras-related protein Rab-3A OS=Bos taurus OX=9913 GN=RAB3A PE=1 SV=3
P20336	Ras-related protein Rab-3A OS=Homo sapiens OX=9606 GN=RAB3A PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00071	Ras	Ras family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR001806	Family	Small GTPase	Interproscan
IPR005225	Domain	Small GTP-binding protein domain	Interproscan
IPR050227	Family	Ras-related protein Rab	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47977	RAS-RELATED PROTEIN RAB	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003924	Molecular Function	GTPase activity	Interproscan
GO:0005525	Molecular Function	GTP binding	Interproscan
GO:0016192	Biological Process	vesicle-mediated transport	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K07912	RAB24; Ras-related protein Rab-24	-	GTP-binding proteins	ko04031	deepkoala