Gene detail

Detailed information of HSymV2.0_g03.05203_t1 in Hydractinia symbiolongicarpus

Genomic Location: HiC_scaffold_3:18557110...18561481
NR annotation: AAX58756.1, homeodomain protein Msx [Podocoryna carnea]

Gene Structure

Sequence

Uniprot

Gene family

Uniprot term	Description
Q09604	Homeobox protein vab-15 OS=Caenorhabditis elegans OX=6239 GN=vab-15 PE=2 SV=1
P15857	Homeobox protein H17 (Fragment) OS=Apis mellifera OX=7460 PE=3 SV=1
Q623D4	Homeobox protein vab-15 OS=Caenorhabditis briggsae OX=6238 GN=vab-15 PE=3 SV=1

Gene family	Subfamily
Transcription Factors Family	Homeobox

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00046	Homeodomain	Homeodomain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000047	Conserved_site	Helix-turn-helix motif	Interproscan
IPR017970	Conserved_site	Homeobox, conserved site	Interproscan
IPR001356	Domain	Homeobox domain	Interproscan
IPR020479	Domain	Homeobox domain, metazoa	Interproscan
IPR009057	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR050674	Family	Msh Homeobox Transcriptional Regulators	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24338	HOMEOBOX PROTEIN MSX	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0000977	Molecular Function	RNA polymerase II transcription regulatory region sequence-specific DNA binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0048598	Biological Process	embryonic morphogenesis	Interproscan