Gene detail

Detailed information of HSymV2.0_g04.06354_t1 in Hydractinia symbiolongicarpus

Genomic Location: HiC_scaffold_4:6509524...6526547
NR annotation: XP_012557432.1, armadillo repeat-containing protein 8 [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

HSymV2.0_g04.06354_t1

ATGAAGATGGACCAGACTGAAGAACCAATGCAAATTGAAGATGGTAATTATATGGAATTGCTAGGTTCAGAGGATAATGATGAGAGATATCAGGCAATTAGGAACATTCGAAATTTGCTTATTGGCATGAAGTCAAGAAAAACTCGTTTTGTAGAAAATGGTTTAATTGAAAAGTTGTTAGAGCTTATGATTGAAGAAGACACAACTGTTGAGTTTGCAGTTGAAGCTGCGGTTGTACTTGGAACAATAGCGCGAGGAGGTCCAGATAACTTGATGCGTATTTTAGATTCACAAGCTTTGCCAATCCTTTGTAAAGGGATATGCCACAATGATGACCGTCTTGTTCAAGCCTGCTTACGTTCATTGCGCATATGTTACATGTCAAATCATTTACCTTCTGATTTGATATTTGAAGATGCAAACATTATAACCAATCTTGTAGAACTTCTGTTGAAATCTTCACAAAGTGCTGAATATGTAGCCAACATTTTACAACGTTCTTGCAAGACTGCAGCTGATCAGTCCATGCTGTACGATGCAAACATTATCCCTGCACTAGCACATTGGCTCACACACAAGAAGAATTTAGTACTAGTTCCAGTGCTCGGATGTTTATCAGCACTTGTACACTGCAACGAAGTTATAGCAAACAAGTTGGTACAATGTCAATTTTCTGGATTAAATGTAAAAGAAGAGCTTGTCAGGTTGATATCACGTGACAAACCTGATGAGATCCAATTAGAAGCGGCTATATGTTTAACAAAGATTCTACGTGCTGTCTCCATTAAAAATGGGTTTGAACAGTTGGAACAAAAGATACTTACAGTGCTGGTTCGCATGTGTCATAAGGAAAAACCATTACGAATTCGAATTGCTGGTGCTAATGGACTAGCATGTTTAATCGAAGATGATAATGAACTTCAAGCAATCGCAGCCATATCTAATCACCTCATAAAAAATGTATCTCTATATTTCAAGCAGTTTGAGCATTTAGATAAAGAAAGCGCAGAGAAAATGAAAGAGAGTGGATTGAAATTATTTGCTGCTTTATCAGCTAATGATGAAAAAATCCGAAAACGGATTGTTGACAGTACTCCAGACTTGATCCCAAGTATTCACGAAGCAGTTAATCAACAGCTAAATATTTCACTACAAATATCTGCATTGCAATGTTTATTAAGTTTATCACGTTCTGTGCATCAATTACGTACTACTTTTCAAGATGTCAAGTTGTGGGAGCCAGTCATCACAGCGTTGAAGTCAAGTATTTCAGATGATATTATAAGCGTTGCATCGTCGGTGTTGTGCAATCTGTTGCTGCATTTTTCACCTTGCAAAGAGGCGTTGGTTGATTATGGTGCTTTGGACGTCTTAGTTACGTTAATAAAGAGGAAAGAAGTTCCTTTCAGAGTGAACGGTGTATGGGGTTTGATGAACCTAGCATATGACGCCAATGATTCTCTAAAAAATAAAATTATTGAAGTAGCTGGTATTCACCAAATATTAAGTTTACTCAGCGATGCGCATGTTGATGTTGCTGTTAAAGCACTTGGAATATTACGAAACCTTGTTACTGAAAAAGAGCACGATATTGATAACCTAATGAAGAATTATGGTGAAAATATCATTAATTCGATAAAGCCTATTGTGTTGGACTACAACGCGAACGAAAAGTTAAAAGAGCAAGTATTATGTTTGCTGTCAAATATCTCGAACGGTACTTTTGCAAAAGATGTCATCATGGCTGATAAGGAGCTCGTTAAAAACGTCATTGAATGTCTAGCAGATCAACGAGAGCAAATTCAGGTAGCGAGTGTATTTTGCATAACAAACCTAATGAGAGGTAGTGACGGGGCCAGTATAGATCGGCAAAATACCCTACGTGAACTTGGCGCTGAGAAAAAATTGCAAACATTGCTCACCACAGCGAACAACAATCTCTTCGATAGAGTAAAAGTTGCGTTACAACAATTTACTTGA

Transcript

HSymV2.0_g04.06354_t1

Protein

Uniprot

Uniprot term	Description
Q8IUR7	Armadillo repeat-containing protein 8 OS=Homo sapiens OX=9606 GN=ARMC8 PE=1 SV=2
Q2KI54	Armadillo repeat-containing protein 8 OS=Bos taurus OX=9913 GN=ARMC8 PE=2 SV=1
Q5R6S3	Armadillo repeat-containing protein 8 OS=Pongo abelii OX=9601 GN=ARMC8 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
--	--	--	--	--

InterPro

InterPro term	Type	Description	Source
IPR016024	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR038739	Family	Armadillo-type fold containing protein ARMC8/Vid28	Interproscan
IPR011989	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR000225	Repeat	Armadillo	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15651	ARMADILLO REPEAT-CONTAINING PROTEIN 8	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0034657	Cellular Component	GID complex	Interproscan
GO:0043161	Biological Process	proteasome-mediated ubiquitin-dependent protein catabolic process	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K23336	ARMC8; armadillo repeat-containing protein 8	-	Ubiquitin system	ko04121	deepkoala