Gene detail

Detailed information of HSymV2.0_g04.06903_t1 in Hydractinia symbiolongicarpus

Genomic Location: HiC_scaffold_4:14055606...14060823
NR annotation: XP_047138496.1, uncharacterized protein LOC100204026 isoform X3 [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

HSymV2.0_g04.06903_t1

ATGTGGTCTCGTTTAGTTATCATATATGCTATTTCTAGCATGGTTGTGTTATTACATGAAACATATTCAGCATCCATTTGTAGATGTGAAAATTATGCATATAACGGAAAGCCTTTTGTCGCCGTATGGAATTCTCCAACGATAGGATGCGACTTTAACTTTAGTGCGCCTATCCATTTAAAAAAGTTTGGTATATATGAAAACGATCAACAGAAGTGGGATGGCAAGAGAGTATCTGTATTTTCATCAGCTCAGTTGGGATTATATCCTTACTTCATTATGAATGGTGAAAGTAGTTACAATGGTGGCTTGCCACAATTGGTTGACTTAAACGAACATTTACGAAAAGCACGAAACGACATTATGACAAAAATGCCGGATCCGAATTATAACGGTTTAGCTGTTATTGATTGGGAAGCCTGGCGACCAATTTGGGAAACCAATTGGAATACTAAAAGAATATATAAAGTCAGGTCGGTCGAGCTTGTCAGAAGTCAACATCCAACATGGACACTCAATAAGTTGATAGAACAAGCTAAACACGAGTTTGAAGATGCAGCTCGTGCTATGTTCGAACATACAATAACTCTCGGAAAAGAGCTGAGACCGAAAGCTTTGTGGGGGTTTTATGGCTTCCCAGACTGCTACGCAAATAAGGAGAATAGGTACCAATGCACTCCTGAGGTTCAAAAACAGAACGAACAGCTGGAATGGTTGTTTTCCGTGAGCACAGCGTTATACCCCTCGATGTACCTGTTAGAAGAACACCCAGATAATCGAGATTACGTGCTTGGGAGACTAAGAGAAACACTACGTTTCGCTACTAAAGGATTTGGAAAAAATAGAAAAAATATTCCTATTTTTGCTTATCACAGAAATATTTATGAAAATTTTCCAGGAGCATTTAAATTTTTGTCTAAGGATGATCTGGATCACACTATTGGTGCTGCAGCAGATATTGGGGCAGCCGGTGTGGTATTGTGGGGGAACAGATATGATGAGAATACGTCACCAGAAGTTTGTCAGAGTATTGATGGTTACGTCTCAGAAACTCTTGGTCCATACCTTATGAATAAAATAAAACAGATAGAGTCATGCAGCAACGCAAAGTGTAATCATCGCGGTCACTGCGTGCAAAAAGCCATTCTCACACCAGCTTTATTGAAACGTTACGAGAATGAGCAAAGACTTTCTTCATGCGCTGGTCCAACATCTCTTCTTCATAATGGCAATGTTATTCAAAAGAAAAGCGAAGTACCAGAAGCACCATTCACAAACAATACAGCATACACACCCACAGCACAAAATATTTCTCAAAATTATGCTGAGTCAGGATATAACATTGATTTAGGCGCCACACATGGAGGAGCGTTAGTAAATCACTCCACTATGGATTCATTTTTTCAACAATTGAACGGCACCAACCTAAATGCTTCTAAAGTTCATCAGGAAAACGTGAAACATCGAAACAACAGCAAGACGATGGAGGCTGTCCATCATAATGCGACACATGGTGGAGGCATAAATAATCATAGTGCCGTAACTCATCACCTTGGTATCAGAACAGAAAATAGCACTCGAGGAAAAATAGCGAAACTTCCAAACGTGAAGAAGTCTGATATTCCTCATCCTTTGGCAGGAAAACAAATGTTATTAAAGCAGAAACAACACAACCTTACAATGAATAAAAAAAAATCAATGTTAGTCCACCAACTTTTATCAAGTGTCCAAGGTAGCCTCATCACGACGCCAGAATTATTAAGAAAACATAACATTACAAACTATGGCGGACGTCCTAATAATAGCAAAAAATCAAGAATAATGCGACCATCTTCTGGGAAAGTACCACTCATGTCAACAAAAAAGTCTCGCAGGTCATGGATGCCACATATGTATGTCATTCTGATTGGTGTATCGCTTGGGGGAGCAGTCTTGTTCTCTGTAATCTTTGTTTCTGTATATTATTATATAAGTCTAAGAAATACATTTACTACTAAACATGGAGAAGGTCAGCTTTTTACAGATGAAGAAAAACCCTCCACTGTCCAACCCAAAGCACACTCGAGTCCTAAAGGTACTGAATCAACGCGGAAGGGAAAAGAACCCAAAAATATTAAACAACGAGAAAACGAGGCGCGCAAAGAATCAACGCGTgaacaaaaacacgatgaagaagaagaaaaagaaaataagtgtaaaaaggaaagtgaaagaagtaaagtgaaaaggGTTAACAGTTTTAAACGATTTAAAAGTTTGGAACGATCTAATACGTCACAAGAGGCCAAACCAACAAAAACAGAACCACCTCAAGATGTGAAGAGATCCTCTTCTCGTTCACGTAGTTGTGATAAAAAGTCAAGAGACAATAGTAAAGACCGCTCAAGGGGTCGCGATGCACGCGGTAACTCAAATATTCCTCAGTTAAAACGTTCTAATAGTCATCGCAGTCGGTCTGCAAGACGAGCAAGAAATTCTGATGAAGAATCAGAATATGAAGTCAATATTAATGAACTTCGTTAG

Transcript

HSymV2.0_g04.06903_t1

Protein

Uniprot

Uniprot term	Description
Q76HN1	Hyaluronidase-1 OS=Rattus norvegicus OX=10116 GN=Hyal1 PE=2 SV=1
Q91ZJ9	Hyaluronidase-1 OS=Mus musculus OX=10090 GN=Hyal1 PE=1 SV=3
Q6RHW4	Hyaluronidase-1 OS=Sus scrofa OX=9823 GN=HYAL1 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01630	Glyco_hydro_56	Hyaluronidase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013785	Homologous_superfamily	Aldolase-type TIM barrel	Interproscan
IPR018155	Family	Hyaluronidase	Interproscan
IPR017853	Homologous_superfamily	Glycoside hydrolase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11769	HYALURONIDASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004415	Molecular Function	hyalurononglucosaminidase activity	Interproscan
GO:0005975	Biological Process	carbohydrate metabolic process	Interproscan
GO:0030214	Biological Process	hyaluronan catabolic process	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K01197	hya; hyaluronoglucosaminidase	EC:3.2.1.35	Glycosylphosphatidylinositol (GPI)-anchored proteins	ko00537	deepkoala