Gene detail

Detailed information of HSymV2.0_g04.07072_t1 in Hydractinia symbiolongicarpus

Genomic Location: HiC_scaffold_4:16693605...16705464
NR annotation: XP_002161527.2, 6-phosphogluconate dehydrogenase, decarboxylating [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

HSymV2.0_g04.07072_t1

GGGTTCACAAGGAAGGAAAGACGTCATGACTTAAATAACGCAAAAGCTAAGTCGCGGCGTTTAGACTCGTTTCTTGTCACTTTTACGGTTAGTTATTCTGTTGGGCAACTTTCTAATCGAGACACGTCTATAATTGAAAACAAATAAAAGCCTGGATGATTATGCAGTTTTCCTCTCTAAAGCTGTTTGTGTTTGATGAGAGTATCTCTGGCTGGGTATAAAGCAGAAACAAAGATACAGATTTTAAACTAAGTTGTATTGATAAACATAAATATGGCGGAACCAAAGGGAGATATCGCATTGATTGGACTGGCTGTAATGGGCCAAAACATTATTTTAAATATGAACGATCATGGGTTTACGGTTGTTGCATTTAACAGAACTGTGGCCAAAGTTGATGAGTTTATGGCTAATGAAGCAAAAGGGACAAATGTCATCGGTGCAAAGTCACTTGAAGATATGGTTTCTAAACTCAAAAAGCCACGCCGAGTTATGCTGTTAGTTAAAGCTGGTTCAGCTGTTGATGCGTTCATTGAGAAATTAGTACCATTATTGGAAACAGGAGATATTATTATTGATGGTGGAAATTCTGAGTATAAAGACACCAACCGACGATGTCGTGATTTAAAAGCAAAAGGTATTGAGTATGTTGGCAGTGGTGTCAGCGGAGGTGAAGAAGGAGCCAGACATGGACCATCCTTGATGCCAGGAGGGTCTTCAAAAGCTTGGCCACACATTAAAAATATCTTTCAATCAATTGCGGCGAAAAAAGATAATGAACCTTGCTGTGACTGGGTTGGAGATGAAGGTTCAGGACATTTTGTTAAAATGGTGCACAATGGAATTGAATATGGAGATATGCAGGTCATATGTGAAGCTTATCATCTGATGAAAACCTGCCTCGGCATGACTCCACCAGAGATAGGAAAGGTAATGGAAGCATGGAACAAAACAGAATTGGATTCGTATTTAATCGAAATATCTGCATCTATCTTACAATACAAGGATGACAAGGGTGAATACTTGGTTGAGAAAATTCGAGATACTGCTGGTCAGAAAGGTACTGGAAAATGGACAGCTATAAATGCTCTTGATTACGGAATACCAGTTACCCTTATAGCCGAATCAGTGTTTGCTAGATGTTTGTCTGCGTTAAAAACTGATCGTGTGGAAGCAAGCAAGTCGTTAAAAGGACCAGACACGAATAAATTTACAGGTGATAAGAAAGCTTTCATTGAAGATATACGACAGGCTTTGTATGCTTCTAAAATTGTATCGTACGCTCAAGGCTTCATGTTGCTACGAGAGGCTGCTAAAGAATTTAACTGGGAGTTGAACTATGGCAGCATTGCTTTAATGTGGAGAGGAGGTTGTATTATTAGAAGTCGTTTCCTTGGTAACATTCGCGAAGCCTTCGACAAGAAGCCAGCATTGATTAGTTTGTTGTTAGATGATTTTTTTAGGGATGCTGTACACAAGTGTCAGGCCTCTTGGAGACGCGTGGTATCCACTGCATTTACATTGGGAGTACCTGTGCCTTGCTTTAGCTCAGCACTTGCTTTTTATGATGGTTATAGATCGGAACGACTTCCTGCTAACCTAATACAGGCACAGCGTGATTACTTCGGTGCACACACTTACGAATTGCTTGCAAGTCCAGGAAAGTTTCATCATACTGATTGGACTGGTCATGGTGGACGAGTGTCATCAACAACTTATCAAGCCTAACTGGTTAGCACCTTGCTTGTTAATAGCTACGACGACTACTTAATTAGAAAAATAATATTTAATGACACAGTAATTCTGCTATATTGGCAtgttgtatatttattttgtagtttatattttgttttgtttATGCACAACCGCGATTAAAATTTTTTAAAATGAAAAAAAAATCTCATTTTGGTCGTACTGATTTAACATATATATGCTTGACACTCTTTTTTTTAATTTTCTTGAATCCATTATAATTGTAAGAATCACGATTTT

Protein

Uniprot

Uniprot term	Description
P52209	6-phosphogluconate dehydrogenase, decarboxylating OS=Homo sapiens OX=9606 GN=PGD PE=1 SV=3
Q9DCD0	6-phosphogluconate dehydrogenase, decarboxylating OS=Mus musculus OX=10090 GN=Pgd PE=1 SV=3
P00349	6-phosphogluconate dehydrogenase, decarboxylating OS=Ovis aries OX=9940 GN=PGD PE=1 SV=4

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00393	6PGD	6-phosphogluconate dehydrogenase, C-terminal domain	Domain	Interproscan
PF03446	NAD_binding_2	NAD binding domain of 6-phosphogluconate dehydrogenase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013328	Homologous_superfamily	6-phosphogluconate dehydrogenase, domain 2	Interproscan
IPR006114	Domain	6-phosphogluconate dehydrogenase, C-terminal	Interproscan
IPR036291	Homologous_superfamily	NAD(P)-binding domain superfamily	Interproscan
IPR008927	Homologous_superfamily	6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily	Interproscan
IPR006184	Binding_site	6-phosphogluconate-binding site	Interproscan
IPR006113	Family	6-phosphogluconate dehydrogenase, decarboxylating	Interproscan
IPR006183	Family	6-phosphogluconate dehydrogenase	Interproscan
IPR006115	Domain	6-phosphogluconate dehydrogenase, NADP-binding	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11811	6-PHOSPHOGLUCONATE DEHYDROGENASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004616	Molecular Function	phosphogluconate dehydrogenase (decarboxylating) activity	Interproscan
GO:0006098	Biological Process	pentose-phosphate shunt	Interproscan
GO:0005829	Cellular Component	cytosol	Interproscan
GO:0009051	Biological Process	pentose-phosphate shunt, oxidative branch	Interproscan
GO:0046177	Biological Process	D-gluconate catabolic process	Interproscan
GO:0050661	Molecular Function	NADP binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K00033	PGD, gnd, gntZ; 6-phosphogluconate dehydrogenase	EC:1.1.1.44 EC:1.1.1.343	Glutathione metabolism	ko00480	deepkoala