Detailed information of HSymV2.0_g04.07440_t1 in Hydractinia symbiolongicarpus

Genomic Location: HiC_scaffold_4:22954909...23023950
NR annotation: XP_047138452.1, uncharacterized protein LOC100206390 isoform X2 [Hydra vulgaris]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q8NF91Nesprin-1 OS=Homo sapiens OX=9606 GN=SYNE1 PE=1 SV=4
Q6ZWR6Nesprin-1 OS=Mus musculus OX=10090 GN=Syne1 PE=1 SV=2
M9MRD1Muscle-specific protein 300 kDa OS=Drosophila melanogaster OX=7227 GN=Msp300 PE=1 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00435SpectrinSpectrin repeatDomainInterproscan
PF00307CHCalponin homology (CH) domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR002017RepeatSpectrin repeatInterproscan
IPR001715DomainCalponin homology domainInterproscan
IPR018159RepeatSpectrin/alpha-actininInterproscan
IPR036872Homologous_superfamilyCH domain superfamilyInterproscan
IPR001589Conserved_siteActinin-type actin-binding domain, conserved siteInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11915SPECTRIN/FILAMIN RELATED CYTOSKELETAL PROTEINInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0003786Molecular Functionactin lateral bindingInterproscan
GO:0005826Cellular Componentactomyosin contractile ringInterproscan
GO:0030036Biological Processactin cytoskeleton organizationInterproscan
GO:0030054Cellular Componentcell junctionInterproscan
GO:0030864Cellular Componentcortical actin cytoskeletonInterproscan
GO:0032432Cellular Componentactin filament bundleInterproscan
GO:0042995Cellular Componentcell projectionInterproscan
GO:0051015Molecular Functionactin filament bindingInterproscan
GO:0051017Biological Processactin filament bundle assemblyInterproscan
GO:1903478Biological Processobsolete actin filament bundle convergence involved in mitotic contractile ring assemblyInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K19326SYNE1; nesprin-1-Chromosome and associated proteinsko03036deepkoala

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