Gene detail

Detailed information of HSymV2.0_g04.07712_t1 in Hydractinia symbiolongicarpus

Genomic Location: HiC_scaffold_4:26404992...26423028
NR annotation: XP_002154980.2, E3 ubiquitin-protein ligase TRAIP [Hydra vulgaris]

Gene Structure

Sequence

Uniprot

Uniprot term	Description
Q40302	Calmodulin OS=Macrocystis pyrifera OX=35122 PE=2 SV=3
P04464	Calmodulin OS=Triticum aestivum OX=4565 PE=1 SV=3
P02597	Calmodulin, striated muscle OS=Gallus gallus OX=9031 GN=CCM1 PE=3 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13639	zf-RING_2	Ring finger domain	Domain	Interproscan
PF13499	EF-hand_7	EF-hand domain pair	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001841	Domain	Zinc finger, RING-type	Interproscan
IPR011992	Homologous_superfamily	EF-hand domain pair	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR002048	Domain	EF-hand domain	Interproscan
IPR018247	Binding_site	EF-Hand 1, calcium-binding site	Interproscan
IPR052639	Family	TRAIP E3 ubiquitin-protein ligase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46569	E3 UBIQUITIN-PROTEIN LIGASE TRAIP	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005509	Molecular Function	calcium ion binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0016567	Biological Process	protein ubiquitination	Interproscan
GO:0031297	Biological Process	replication fork processing	Interproscan
GO:0061630	Molecular Function	ubiquitin protein ligase activity	Interproscan
GO:0090734	Cellular Component	site of DNA damage	Interproscan