Gene detail

Detailed information of HSymV2.0_g05.07923_t1 in Hydractinia symbiolongicarpus

Genomic Location: HiC_scaffold_5:3847118...3849154
NR annotation: CAB3995278.1, Hypothetical predicted protein [Paramuricea clavata]

Gene Structure

More details in Jbrowse

Sequence

CDS

HSymV2.0_g05.07923_t1

ATGAGTGGCGATGTTGAAAGCAATCCTGGTCCCGCACTCCAACGCGGATTGAAAGCTCCATCTTGTTCAATCTGTGAGAAATGTGTTAAATGCAATCAAAGACGATTCATTTGTGATACATGCTGGGAAACCACTCACGCTGCTTGTTTGAACCAATCAAATTTAGTACTCAATGGTAGAATTCCGAAATATTGGACCTGTTCAGATTGCCATTTTACTGTGCTTCCCTTTTCGAATGTACGTGATGTTTGCGCATTGTACTCATCTATTCTGAGTGATGGTGGTGAATACGAGGAATTAATAACCATACCAAGCAATCCAAAACATACGAAAATTTGCCATCTAAATACGCAATCCTTACCGAGCACATTTGACGAGTTCTCATACATGCTCGAATGTCATAAATTTGACATAATCACGTTGTCCGAGACATGGTTAAAAAATAATCAGGTATTGATTGATTATGTAAACATTCCAGGATACCAATTTGAATATAAAAACAGAACTGATAAACGAGGAGGTGGTGTTGGAATGTACATCAAGGACGAACTTATTTACAAAACTAGAGACGACATAACCAAACTCGACAATTCTATCGAACATGTCTGGATCGAAGTGAAAGGTAGAAATAAAAATTACTCATATCTAGTTGGAACATTTTATCAGCCATCTTCTATAGAAAGAGAAAAAAAAGATTGGCTAGAACGATTTGATATTCTTTTGCGTCACATCACCGCAaaatgggacggtattatcataattacaggtgacttcaatatcgacttattacaaggtgataaatccacaatcgaattatatcaagatacacttatgacttatgacctaaaacaacatattacaaaaccaacccgaaaatcgacattccttattgatcatgttattagcaatataccggaaaaggtagttagtgagaacgttttattgtgcgatgaaatttctgaccatgatgccccgcatatcgttatgaatatcaaaaaggataaattcgaaaaacgatacaaatttatacgtgacgagaagcagttgaacatcgatgaatatattagtgatatcgagaagattcctttttccttgatagatacttttgatgatccggaagatcaactgtatgttatgaatgaactcatactgtcctgcattaatagccatgctcctttgaaaaggtgtaaatttacacgaccaccagctccctggatgaaggacccatccattgtatcgtcgaaactgaaacttgatgaacttcgtagtgaattaaaatcttgtgatgacagagaggctaaacatgagtatattgaaacgagaaataaattgaagaaggctatcaaacactctagaagaaccttctatcaaaaggctttatcaagtaaccgttcaaaggaagtatggaaaaccataagaactattattaaaccacagttcaaacaaatcaggcagaatcccgataccatcaatgattatttcaattccattgcaataaagttaagcaatacaaatgagttaaacatttctcccaccatgaatgatgaggctgtaccggcaatggatttatttgaccttcgtcacgctacccaagaggatgttctcaaacatttgaattcattgagaagtgattgctctactggtggtgataacataccagcgaaattcataaaaccagtcgcagcccaattgtcgccagtcctaacaaagattttgaataactgcatcgatgcaaacgtatttccaacatgctggaagaaatcacgtatctgtccggtacctaaagttccaggtgcttcgcaactagaagattttcgtccaatatcaatacttcctgtactgtcgaaagtatatgagaaagtcattttatcacagctttgtgacttcattgatagatataacatttacgcttcaactcaatctggttttcgcaaaggtcactcgtgcatcacgatactcttaaaattaaaggacgacattttgaaggctatgcaaagaggtgaagtaactttatcagtgtcagcagattactcctaa

Transcript

HSymV2.0_g05.07923_t1

Protein

Uniprot

Uniprot term	Description
Q9NBX4	Probable RNA-directed DNA polymerase from transposon X-element OS=Drosophila melanogaster OX=7227 GN=X-elementORF2 PE=3 SV=1
P21328	RNA-directed DNA polymerase from mobile element jockey OS=Drosophila melanogaster OX=7227 GN=pol PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03372	Exo_endo_phos	Endonuclease/Exonuclease/phosphatase family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036691	Homologous_superfamily	Endonuclease/exonuclease/phosphatase superfamily	Interproscan
IPR005135	Domain	Endonuclease/exonuclease/phosphatase	Interproscan
IPR019786	Conserved_site	Zinc finger, PHD-type, conserved site	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46670	ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003824	Molecular Function	catalytic activity	Interproscan