Gene detail

Detailed information of HSymV2.0_g05.08094_t1 in Hydractinia symbiolongicarpus

Genomic Location: HiC_scaffold_5:5714844...5722669
NR annotation: XP_047128725.1, WD repeat-containing protein 6-like isoform X1 [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

HSymV2.0_g05.08094_t1

ATGACGTGTACAAATGAAGGTGTCGTGTGGAAGTATGTTCTTTCATCAAAAACATGGACAAAAATATATGATGATAAAAAATTTCAATCCTATTGCTGTTTCGATATTTCTAGTAATTTGGTTGCCATGGGGAATCTTAATGGTGTCGTGGTTGTTTTTTTTATTGATAATGCTAACATTTTCTGTGTTAAAAAGATATGCAGTGGAAAAATCTTTAGTTTAACGTGGCTCCTACATAATACAGCTGTTTTTCTGCTTCTCACTGGACCTGAAGGTGAAATAAAGCTGCTTGCTGTCAAGAAAACGTCCACCTCCGTAACCATCGACATCAAAGTTTCATTTTCATTACCCCATTCGCGACAAAGATGGGTTTCTGCAGCCAGCCTGGTGAAATACAGAGAAAAAAATTTGGGGGATGATTTTTTGTTAGTGTGTGGGGACAGGAGAGGTTCTCTCCATCTTTATGAGCAGACTTCTCAGGACCCCATACAATCAATATTGGGAGTACATGGAAAAACTGGTGTTACACAAGTTATATCTGTGGATGGTTGCGTGTATACAACAGGACGGAATGGTGTTTATCAGAAATATGAAGTAGATCCGATCAAGAAATCTATGGTGTTGCTTGATAAGCAAAAGGCTTGCAAAGGAATGGATTGGATTGAAGGTATTTGGCTCAATGAGGATGATGTGATTGTCTATGGTTTTTACATGCAATCTTATTTCGCGGCTTGGAGCAATCAATCAAACGAACTGCTATTTAAAATCAAATGCGGAGGAGGGTATCGATCTTGGGATGTTCTCTTCCCTACCGCCGATTATAGAATTTTATCATTTGCCTACTTAAAAGGTGCCATCATCAATGCAGTTTCATGTACTTGGAACACGAAAAGTCATGGTCGAACTATCCAGGAAAATCTACATGGTCGTGAAGTGTTGTGTATGAAAATAATAGGATGCACATCAGTTGAGAATGAAAATCATTACTTGATAGCAACTTGCAGTGAAGATACGACCATCAATTTTATGTTGTGTATCCTTTTCACAATATCATTTTACACAGAACAAAGAGGTTTAAAAGGAGAAGTGAATTTATTAGATAATCCGGACAGCCTATCCCTGACCGGCATACACACCGCCACCGGTCACATTGGAGGTATAAAAGATATATTCTTTTTACCCACATCAAAGCAAGCTACAAACACACTGGAAGGTTTTTTTATTTCTTGTGGAAGTCGAACATCTTTGAAAGTTTGGTTTTTGAAAGATTACATGGTTTCTTCATTCGTGCTTGCTCACAGCAATAGTCCTTTACTAAGAAATAATAAAACATGCATGCTTGATAAAAACCAGGGCGATGTACAAAATGGAACCAATGACGCTATTTTACAAAATAACTTCCAAAGTACTATACATTTAGAAAGATGGAATAATGATTTTCAGAAAGAAAACCGTAGTGTTGATAATTTTCAAAGTAATATAACGTGTGGTCTTGTTGCGGAAATTTTCAATCCTGAAACGACCATGAAGAAAGTGAAGTTAAAAAATCATGACTTGGTGGATGACATGAGATTTTTATGTTGTACTGCTTTCATGTTGTCGGATGTTTTTTCCGATATGTGGACGTCAGGTGTGATGTGCTGTGTTTGCGCATGCTCGGACGGTTTTGCCAGGATATACACGTTTTACAATGCTACATTCGAACTATTAGCGACGTTGGACTTTCATAAACATTGCGTGCAAACTGTCGCTCATTGTAACACTAATGAGCGATGTGTCGTTTTTACGACAGCTGCAGATGGTAGGATTGCGATCTGGGATGTTACGAAAGTGTTGCGAGAATACCTCGATAACTTACTGGAGCGTGAAGTTGCAACTTCTACATTTGGACATGAAAATGTAACTACCGTTAATCATGTGAACCAAAACAAATTTAAATTCCATGACATTAATACACCGGTATTCAGTCTTACACAACCTAGCTGCTCCATTAAAGTACATCAATCTGGGGTAAACGCATTGGACGTTTTTGAAACTTCAACAGGGTTCTTGTTACTGTCTGGTGGGGACGATAACGCATTACACATGTGTAAAATTGAATGTGACTTACATGAAGAGACAAAGTTTTCTCAAATACATGCACATATATCATCTATATCAGCTGTGAAAATCATTAACGATAAGCTATGTGTATCCACCAGCATTGATCAGCGAATCAAATTTTGGAAAATGACGCCATCTCGATTCGTTCTGGTTCGTGAAATCCTATCAGATGTTGCCGATATCAGCAATTTGGAAATTTGGAGCGACAGGCGGTGCATTTATGTCGGAGTAACTGGAATTGGGATCGAAATTTTCAAACTAAGCTGCGAAGAACTAATTTAG

Transcript

HSymV2.0_g05.08094_t1

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400	WD40	WD domain, G-beta repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036322	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR001680	Repeat	WD40 repeat	Interproscan
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR011047	Homologous_superfamily	Quinoprotein alcohol dehydrogenase-like superfamily	Interproscan
IPR051973	Family	tRNA Anticodon Loop Methyltransferase Regulator	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14344	WD REPEAT PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0030488	Biological Process	tRNA methylation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K24737	WDR6; WD repeat-containing protein 6	-	Domain-containing proteins not elsewhere classified	ko04990	deepkoala