Detailed information of HSymV2.0_g05.08482_t1 in Hydractinia symbiolongicarpus

Genomic Location: HiC_scaffold_5:10334284...10342912
NR annotation: XP_012559772.2, tRNA pseudouridine synthase A [Hydra vulgaris]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q4KM92Pseudouridylate synthase 1 homolog OS=Rattus norvegicus OX=10116 GN=Pus1 PE=1 SV=2
Q9WU56Pseudouridylate synthase 1 homolog OS=Mus musculus OX=10090 GN=Pus1 PE=1 SV=2
Q9Y606Pseudouridylate synthase 1 homolog OS=Homo sapiens OX=9606 GN=PUS1 PE=1 SV=3

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01416PseudoU_synth_1tRNA pseudouridine synthaseDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001406FamilyPseudouridine synthase I, TruAInterproscan
IPR020097DomainPseudouridine synthase I, TruA, alpha/beta domainInterproscan
IPR041708FamilyPseudouridine synthase PUS1/ PUS2-likeInterproscan
IPR020094Homologous_superfamilyPseudouridine synthase TruA/RsuA/RluB/E/F, N-terminalInterproscan
IPR020095Homologous_superfamilyPseudouridine synthase I, TruA, C-terminalInterproscan
IPR020103Homologous_superfamilyPseudouridine synthase, catalytic domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11142PSEUDOURIDYLATE SYNTHASEInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0001522Biological Processpseudouridine synthesisInterproscan
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0009451Biological ProcessRNA modificationInterproscan
GO:0009982Molecular Functionpseudouridine synthase activityInterproscan
GO:0031119Biological ProcesstRNA pseudouridine synthesisInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:1990481Biological ProcessmRNA pseudouridine synthesisInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K06173truA, PUS1; tRNA pseudouridine38-40 synthaseEC:5.4.99.12
Transfer RNA biogenesisko03016deepkoala

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