Gene detail

Detailed information of HSymV2.0_g05.09061_t1 in Hydractinia symbiolongicarpus

Genomic Location: HiC_scaffold_5:20025640...20028565
NR annotation: XP_056440286.1, amiloride-sensitive amine oxidase [copper-containing] [Gadus chalcogrammus]

Gene Structure

More details in Jbrowse

Sequence

CDS

HSymV2.0_g05.09061_t1

ATGTTCTCGAAAGATGGAGGTGGTTCAAGATGTCTGCGCATTATTATCTCATGTCTTGCACTAATTATTGTGGCTATGGCTGTTGGTATTGTATTCTTATATATGGAACTAGATGAGGCGAAGGACAAAAATGAGGACAACAAATTGACCTGTACCAAAAGCGATTTTGTTATCAATCCACACTTAAATGACACAAAAGGTATATTCCATGAGCTCAATGAAGAAGAAATAAGGCGTGTTGAAAGTTATATTCTGAAGCTACATAATATATCCAGTGAAACGAGAGCTCCTGACAAGTACATTATGTTAATTGATGTTTTTTATCCTCTGAAACAAGATGTCCTGAATTATCGAGACAAAAATGATATTAGGCCTGTTAGAAGAGCAAAAGTGGTAATTATGAATGGCCACACGCTATCTGATTATGTTGTTTGGCCTGTTAATAATCCTAAACATAGTGAATTAATCCAGTACTCTGATCGACCTAATCCAGTTTACAATAACCTTGGAAGATTTAATTCGAAGGTCGTATATAACAACCAATCATATTCGAGCGTTGATGACATTTATAAAGCATTTATGAATAAAACACTGACCGTAGTCCACGTACCAAGCATTCCCGAATACGAAAACAAAGAAAGTTTGTATCGCAGCCATGATGGAAAAGAATTTTCAGGACCAATGTTAACTGAGCATGGTGGACATCGATTTTCTATTCAAGGCAGAATAGTTAAATATTTTAAATGGCAATTTGAGTACGGTGTTCGAGCTTTAACAGGGCCAGGAGTATTTGACGTTCGTTTCCAAAACAGGAGAATAGCTTACGAAGTAAGCTTACAGGATTACGCATCGTTTTCTTCCTCAGCAGGACCGTTTCTTTCATCTGGACATTTCTTTTACTCGTTGCATGGTCTTGGGAAAACAGTATCTTTAGTAAGAGGTGTAGATTGTCCTGAGAAAGCAGTCTATATGGACAGCACGAGCTATTTCAAAATGGTAGCATCAGATAAACAATCCGTCGTGACAAAGGATGCGATTTGTATGTTCGAGATAAATAATAATTTACCGTTACGGCGTCATAGAACGTCGTCTGAATACGGCGCCCATCCGGATAATGTATTAGTAACACGGTTTGTTCTGGATATCCAACTTTTAGAAGCTGACGTCATATTTGACTACATATTTCATCAAAATGGCGCGCTGGAAGTCAAAGCAACTATCACAGGATACCCTGTTGTAAATTATAAATTTGAGAATGTTGCCAATGGTTATGAAATTTATAGTAATCACATAGGTATGATTCATGATAATTTCTTGTTGTTTAAAACAGATTTGGATGTAGATGGCGCAAATAATTCTTTTTTAACTTTAAGCACCGCTACAGGAATGTATAAAGAGCCTTGGGATAGTGAACCAGTTCTTAAAAAAAAATTGAAGATTAATAACATTCGATTTGAAAAAGAGGCAGCCATCCCAGGTAACAGTTCTTTGAACTATTTTATTGTTTATAATAAAAATTCGAAGAATAAATTCATGCATAACCGTGGTTATCGCTTGCAAATCCTTTCCCCAACACGACAAATTTATCCCGACGATCACATCGCGACATTAAATGCTGAATGGACAAAATATAAACTTTCTGTGACAAAATATCATAAAAACGAAACTTCTGGAGCGTGCTTGCTAAACAAGGTAAGACAGAAAATACCGCCGACGTGTTCATTTGATCAACGAATCAACAATTCGGAATATATAGAGAACACTGATATTGTTGCATGGGTAACTATTGGCGGCCTTCAGATTCCAACAAGCGAAGACTTCCCAACTATTACATCAGTCGGTAATCAATATTCATTTTTGTTAAGACCATTTAATTTCATGGATGAAGACGCCAGCATGACGTCATCAGATAGCGTGTATTTCAGGAAGACGGACAATTATTCAGTAAAAAATATCACGAAGACAAATGCTTGCAACGTGTAG

Transcript

HSymV2.0_g05.09061_t1

Protein

Uniprot

Uniprot term	Description
O08590	Amine oxidase [copper-containing] 3 OS=Rattus norvegicus OX=10116 GN=Aoc3 PE=1 SV=4
O46406	Primary amine oxidase, lung isozyme OS=Bos taurus OX=9913 PE=2 SV=1
Q8JZQ5	Diamine oxidase [copper-containing] OS=Mus musculus OX=10090 GN=Aoc1 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01179	Cu_amine_oxid	Copper amine oxidase, enzyme domain	Domain	Interproscan
PF02727	Cu_amine_oxidN2	Copper amine oxidase, N2 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000269	Family	Copper amine oxidase	Interproscan
IPR036460	Homologous_superfamily	Copper amine oxidase, catalytic domain superfamily	Interproscan
IPR015798	Domain	Copper amine oxidase, catalytic domain	Interproscan
IPR015800	Domain	Copper amine oxidase, N2-terminal	Interproscan
IPR016182	Homologous_superfamily	Copper amine oxidase, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10638	COPPER AMINE OXIDASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005507	Molecular Function	copper ion binding	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0008131	Molecular Function	primary methylamine oxidase activity	Interproscan
GO:0009308	Biological Process	amine metabolic process	Interproscan
GO:0048038	Molecular Function	quinone binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K11182	AOC1, ABP1; diamine oxidase	EC:1.4.3.22	Tryptophan metabolism	ko00380	deepkoala