Detailed information of HSymV2.0_g05.09354_t1 in Hydractinia symbiolongicarpus

Genomic Location: HiC_scaffold_5:23710612...23734271
NR annotation: XP_047124698.1, DNA mismatch repair protein Msh3 [Hydra vulgaris]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
P20585DNA mismatch repair protein Msh3 OS=Homo sapiens OX=9606 GN=MSH3 PE=1 SV=4
P13705DNA mismatch repair protein Msh3 OS=Mus musculus OX=10090 GN=Msh3 PE=2 SV=3
A1L258D-2-hydroxyglutarate dehydrogenase, mitochondrial OS=Danio rerio OX=7955 GN=d2hgdh PE=2 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF05190MutS_IVMutS family domain IVDomainInterproscan
PF02913FAD-oxidase_CFAD linked oxidases, C-terminal domainDomainInterproscan
PF01565FAD_binding_4FAD binding domain DomainInterproscan
PF05192MutS_IIIMutS domain IIIDomainInterproscan
PF01624MutS_IMutS domain IDomainInterproscan
PF00488MutS_VMutS domain VDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR027417Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR016164Homologous_superfamilyFAD-linked oxidase-like, C-terminalInterproscan
IPR007861DomainDNA mismatch repair protein MutS, clampInterproscan
IPR000432DomainDNA mismatch repair protein MutS, C-terminalInterproscan
IPR016169Homologous_superfamilyFAD-binding, type PCMH, subdomain 2Interproscan
IPR007696DomainDNA mismatch repair protein MutS, coreInterproscan
IPR004113DomainFAD-binding oxidoreductase/transferase, type 4, C-terminalInterproscan
IPR016171Homologous_superfamilyVanillyl-alcohol oxidase, C-terminal subdomain 2Interproscan
IPR051264FamilyFAD-binding Oxidoreductase/Transferase Type 4Interproscan
IPR036187Homologous_superfamilyDNA mismatch repair protein MutS, core domain superfamilyInterproscan
IPR036678Homologous_superfamilyMutS, connector domain superfamilyInterproscan
IPR016151Homologous_superfamilyDNA mismatch repair protein MutS, N-terminalInterproscan
IPR006094DomainFAD linked oxidase, N-terminalInterproscan
IPR007695DomainDNA mismatch repair protein MutS-like, N-terminalInterproscan
IPR016167Homologous_superfamilyFAD-binding, type PCMH, subdomain 1Interproscan
IPR016166DomainFAD-binding domain, PCMH-typeInterproscan
IPR036318Homologous_superfamilyFAD-binding, type PCMH-like superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR43716D-2-HYDROXYGLUTARATE DEHYDROGENASE, MITOCHONDRIALInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003824Molecular Functioncatalytic activityInterproscan
GO:0050660Molecular Functionflavin adenine dinucleotide bindingInterproscan
GO:0005524Molecular FunctionATP bindingInterproscan
GO:0006298Biological Processmismatch repairInterproscan
GO:0030983Molecular Functionmismatched DNA bindingInterproscan
GO:0005739Cellular ComponentmitochondrionInterproscan
GO:0071949Molecular FunctionFAD bindingInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K08736MSH3; DNA mismatch repair protein MSH3-DNA repair and recombination proteinsko03400deepkoala

TOP