Gene detail

Detailed information of HSymV2.0_g06.10206_t1 in Hydractinia symbiolongicarpus

Genomic Location: HiC_scaffold_6:11527878...11530205
NR annotation: GFR69344.1, endonuclease-reverse transcriptase [Elysia marginata]

Gene Structure

More details in Jbrowse

Sequence

CDS

HSymV2.0_g06.10206_t1

ATGACAAGTAGTGACCACAGATTAGTACTGAGTAAAATTAAAGTTAAACCTTTTCAAGTCTTTAAAAAAACAAGGACGGTGAAAGATAACATCAAGAAAGTAGACATAGCACACCTTACCAATAACGAAAACATGAGAAAAGCTTACCAACAAAATCTAGAAACAAGTTTACAATCAAATGTTTCAGAAAACATCAGTATTAAAGAAAAATGGGATGCAGTGAAACAATCAATTAAATCTGCTGCTGAACAAACACTTCCTAGACAGATCCCAAGAAATCGTAACCATGGTCATAACTATGATCCAGAAATTGAACAAATGTCAAAAACACAAAAGGAACTTCGTATTCAAATCAGTAACTGCAAAGATCTTGACAAGATGACAAGGTTAAAAAACGAAAGAAATAACATCATGAGACGTATCAAAGACAAGCTGCTAGaaaataaaacaaaagaaatcgaaaataaattaaGTGAAATCAACCAAATGAAGGATACAGCAAAAACGTTCAAAGCCCTACGGATGCTGCACTCAAAACCATATGAAAATCCATATGTTCACGACGAAACTGGTAAACATATCGCATCACCACAACTAGTATATGAAACAATTAAATCTCACTTTCAAACACAATTCTACAAACCAAATGAAACCAACTTACAACAATTCATCGATAATCCTAAACCATTGAACCAACCAATTACTACTGAGGAAATCAGAAAATGTGCAAATCTACTTAACAACAACAGAGCATCAGGTTTCGATAACATCTCAGCTGAACTTATTAAATATGCTCCCACGATTTGTCACAATGAAATAGCTGATATAGTGAATGACTGTTTCAACAAAAATGAAGACATCGATGTTGGAAAAGGTATCCTCATCCCACTGTGTAAGCCTAAAAAACCTAAAGGCCCTGTTAAAAATCTACGTCCTGTAACTCTACTTCCAATCATTCGAAAGATTATTTCCAACGTAGCTCTTCAACGCATCAAACCAAAAATTGACGACTACCTTTCATTAAGCCAAAGTGCTTTCCGACAAAATCGAAGCACGTCAGACGCTGTATGGACTCATCGCTGGTTAGTTGCAAGAATTGAAAAATACCAGGAGAAGATTTATATTACAGGTATCGACATGAGTTCCGCATTTGACACCATCAAAAGAGACGAGTTGTTAAACATCCTTGGTAATGTAATAAACGAAGATGAATTGAGATTAATTCGATTTTTACTTGCTAACACAAGTCTTGAAATCAGAATAAAAATTCTGGAAAAAGACCATATCCTTGACGAACATTCATACTCAAAGAGAAACGAATCATTACTCCCAGTGACTGAAGTGATATACGCTGATGATTACGACCACATCACAGATGACATCAACAAAAAGAAGAAATTCAATAACATCATAAAAGAAATTTTAGCTAAGGATAATTTGTTGGTAAACGAGACAAAAACAGAACACACATTACTagaaagaaagaaaaaagtaaacaacgaaacaaatgaaCCGTGGAGACATGTCAAGAAATTGGGGTCAAAGCTAGGTATCCATGAAGATATAGCTAACAGAAAAGCATTGTTAACAGCTGCCCTACAGAAAATAAGTGATGTGTGGATTAAGAAAGATAAAATCAGTACTCAGCTAAAAATCAGAATCTATCAAACTGTAGTCAAATCCATATTATTATACAACTGTGGTACATGGGGTTTGAACAAAAATGAAGAAAAGAACATGAATTCCTTCCATCGTCGACAACTTCGTCAAGTATTAAACATCAAATACCCAGTAACAATAAGGAACAAGAAGTTGTACGAAATATCAAAAACAAGACCTATTACATTGGATATAATCCAAGCTCGATGGAGGTTATTTGGGCATGTTCTCAGATTACAGAAAGACACACCCGCTCAACTGGCTATGAATCACTATTTTGAACAATCGCAAGTATCAAAATTCAAAGGTCGTCAACGAATTACGTTACCAATCAGTTTAAACAATGATATAAGAAGAGCAGTGGAATCTGATAACAGTTTTGCAATAAAATTTGGCGTCTCGCAATTGATTTCGAAACATGACCTAAAGGTCTTAAGGGTAATCGCTGAAGATCGAAATACATGGAAGTCCCTTTCAAGGCACATATATATTGCAGCTGAAGCAACTACTTATACTGAAGAAAATCTTACAGTAGATGATAGAAGCGAAGACAGCTGA

Transcript

HSymV2.0_g06.10206_t1

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000477	Domain	Reverse transcriptase domain	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR052560	Family	RNA-directed DNA polymerase, mobile element	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR36688	ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
-	-	-	-

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K03093	sigI; RNA polymerase sigma-I factor	-	Transcription machinery	ko03021	deepkoala