Gene detail

Detailed information of HSymV2.0_g06.11086_t1 in Hydractinia symbiolongicarpus

Genomic Location: HiC_scaffold_6:23724815...23740688
NR annotation: BAA36344.2, pox neuro [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

HSymV2.0_g06.11086_t1

ATGACTGTGGAAGATTTGTGCGTTGCACAGGAACTAATCGAAGAGATACATGCTGATCTCGATTTAGATGAAGATGGAATCACAGATGAAGAAGTGAACAGAAGAAAGACGCGCATATTTGTAGGTGGTTTGAGATTTGGTTCGGAAGATCATGTTTTGCATGATTATTTTGATCAATTTGGACCAATCAAAGAAGCTGTTGTGATCAGAGATCGAAAGACTGGTTTGTCGAAAGGATACGGATTTGTGACGATGACGGAAGAAATGAATGCATTGAAAGCCATTTCTGATAAAGCACCAAAGTTGGATGGAAGACGATGCAATGTCAACCTTGCTTATATTGGACAAAAGAAAAAACCACCATCAAAGAAAAACGATTTTCGGTTTAAAGAAATTGGTCCTTCGTCTCCTACCAATTATTATTTGAATGGTCTGTATCCTCCTCAACTAGTGACAAAAAATGGTCATTATCCTTTATTGGGCTTGCCACCCCTCCATGGGTGCCAACCAATTTATCATTTTGCACCAAGTCCAACAACAGCCTACGAGAATCACAACACTTGCGATCCTTACATGCACCACTCTCCGATGACGCCGATATCTCCCATGTATCCACAGACGATTTTTTTCTCGCAGCCCATGATACTAAGCCCATCGCCCTTAAACAACAACAACAGCTACGCGTATCCCCCTCCCACGTTGTCACCGAACAGTGACTGCGATAAAAATAATACCATCGCGGATAACATCGCACCTATCGCGCCTGTCGCATCATCACCTTCGTCATTCACATCGATGACTGTATCGCATCAACCACCGGATATAGTTCCTATTACGTCACATAATGTAACTGGTGGTCCAATTATTATGGCACAAAAATCTCCCATAAACGGAAATGCAATTGTCCTGAACAGCCATCATGATCACGTGGGTACAAGCTACCAAACTTTAAACAACAACAACTTGCCGACAGTAAATGGTTCCTCTAATACACATCTTATTCAAAATAATAATCACATCATCAATGGAAATTCGAGTCATTTATTCAACGGAAATCACGTGATGAACGGTCATAATTCGTGGCGCTGGCTTAAAAAACCTTGGATTAATAAAGGTATACACACACGATATCTGATCTTTAAAGTGATGGATCATTCGCCTCGATCATTTGATGCTGGCATGCACGATGAGAAAGGAATGCCTTTCAGCGAAAGTAAATTCACAATAAATGATCCTGGTGGTGTCAACCAGTTGGGTGGAGTATTCGTCAATGGACGACCTTTACCGGATTACATGCGCCACAGAATTATCGAGCTTGCTCAATGTGGTGTCCGCCCTTCGGAAATTTCAAGACAATTATTAGTATCTCATGGCTGTGTCAGTAAAATTCTAGGACGTTATTACGAAACTGGTTCAGTACGCCCTGGCGCTATTGGCGGTAGTAAGCCAAAGGTGGCAACGCCTAAAGTAGTGTGTCGTATAGTAAAACTTAAAGAAGAAAACCCGTGTATGTTTGCATGGGAGATAAGAAATTCTTTACTTGGTGAAGGAATATGTGATAACGGTAACGTACCAAGCGTTAGTTCTATAAATAGAATATTACGTAATCATGCTGCCGAAAAAGAAACAAAGGAAGCGAAAATAAAACAGGAAGAACTTCAGAAACAAAATGGCTTCGGAATGATGAATGGTTTTACGTTGGGTAACTTCGGACCTTTTAACGGTCTAAATGGCATGACAGCAAACAACTCTGAGAATGGTTACGGTCAATTTCCTTTTACTTTTAATGCTGGCTTCCCTATGTTACCGATGcaacaacaacaacaacaacaacaGCTATTAAACCTACCGTTAACACAGTTATCACCAGATCGTAAATATAAAAACACAGATGTTAGTTACCAACAATTAGTAAACGCCCAACATTTTAATGACCAGGATGGTCTCAACGATGTGCCGCCTCCGGCTGTTCATATAGATGATCTACCGCCGTCATTACGAGAAGGCACACCCATACATCATCAAGATACATCTCATTTGCCTCATCCTGATATATCTCCTAGTTCAACGATTATCAGTGCGGGAAGTGGTGAACATAAAGAAGGTGATACGCCTGAGGATGAAAGACGTCGCCAACGCAACGAAAGTCTTTCTGATCGACTTCCTCATGGCTCGTCAAGTCATACAGAATCTGAACATGGAGAGCGAGGCCATAAACGAGGCCATTCACCATTAAGACCGGACAAAGAAGAAAATAATAACAATAAATCAGGAAACTCGACCGGTAATGGTACACTGAGCCCAGATTTGAAACGAAAAAGATATAACGAAAGTCCTGTGGGACACGCAGATCCAATCATGTCACAAAAGGTATCTCCCACGTGGTACAAATACAACACAGTTTTCCCTTCAAACAGTAACATGGCGGCTGTAAACAGTATGAATGCCGCGTTAAACCAAATTAATGGCGCTTTAAATTCTTTTCAAAATATCGGACAATACTCCAACGGCGTGAATAACTTAAACGGCTTATCTTTGAATGCTTACGCAGCAGGCATAAATAATGTTGCCACGTTGAACGCAATGAACACTGGACTTACTAACTTAACTAATTTACAGAATCTTACTGGACAAGGAGTAACTGGATTTACACCCACCTTCGAAAATGAACGTTCTCTAGCGCAGCATGGTTTAAACGCAGACTTTACATGGCCAAATAATTTCGTTAGTGTGTTAACGGATGGGTCGCCATATCAACAAGCAGTAAATATTTCATCTAACGGGAATGTATTGAACTCATCTTTCGGTTTAAATATGTCGCTACCCAACATGCCGAAAAACATGGTTCAAGGCTTAACAAACTCCACGTCGCCAACGAATGTATTATCGACGTTGTCATCGCTACAAGGACAACAAAATATGTTTAGCTTGCAGAACCAAGTCGGTAACGGAATGCAAAATGTACAATTTCAAAGGCCAGACCAGCTGACAATGAAAATGATGGGTTCGAATTTATTAGCTTTACGAGGTACACACGTGGCGCACGGTAATTAA

Transcript

HSymV2.0_g06.11086_t1

Protein

Uniprot

Gene family

Uniprot term	Description
Q90268	Paired box protein Pax-2a OS=Danio rerio OX=7955 GN=pax2a PE=2 SV=2
P32114	Paired box protein Pax-2 OS=Mus musculus OX=10090 GN=Pax2 PE=1 SV=2
Q02962	Paired box protein Pax-2 OS=Homo sapiens OX=9606 GN=PAX2 PE=1 SV=4

Gene family	Subfamily
Transcription Factors Family	PAX

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00292	PAX	'Paired box' domain	Domain	Interproscan
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001523	Domain	Paired domain	Interproscan
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR036388	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR043565	Family	PAX family	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR009057	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45636	PAIRED BOX PROTEIN PAX-6-RELATED-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0048856	Biological Process	anatomical structure development	Interproscan