Gene detail

Detailed information of HSymV2.0_g07.12075_t1 in Hydractinia symbiolongicarpus

Genomic Location: HiC_scaffold_7:12393908...12396923
NR annotation: KXJ29169.1, hypothetical protein AC249_AIPGENE17048 [Exaiptasia diaphana]

Gene Structure

More details in Jbrowse

Sequence

CDS

HSymV2.0_g07.12075_t1

ATGGCGGCTCACGTGGATAAGCACGAAATGCCTTCTTTAGCAGTATCTCCTCCTGATAATGATATAACTGAACAATGTGATCACTTGGAGAGTGTTAATCGAATGGATGAGGGTGCAATTTGGAATTGCACAGATGTCGATCTTGAAAATCTTGGCTTGATAGAACGTGGACACATCATATCTGTGAAAGGATTCTGTATGCCTATGGGGAAAAACAAAGATAAAGAAGTATTAATAAATAGCATCCGAGCTACAGGAAAAGAAAGACTAGAGCCTTCTTTGAAAAAACGTCGTAACTTTAGCACGAAAAATGTGACCTTTGGTTGGATGCATTTTGATGCAGTAAAAAATCGTTATGTTTCGGTACGTTTATCGAAAGGAGGAGGCACAAGGAATACATATTTTTCAAATGACAGTGGAATGACTGATTTGTTAGAATTTGGGAAAACTTTATTTTTTCCAAATGGCTGTTCTATTCATGGGCATTTAAGTGACATGGTAGTACATCTAGGGAATTATAAGGGTGACATTATTATGGATGAAGACTTCAAGCTTGCAAATTATATATACGATAACAAACTTTCAAAGACAAGACTGTACTTGTTGACTAAAGTAAAAAATAAAATACAAGCTCTTTTGGAGGAACTAAGAAGCCCTATTATACCTGTGACTGATGACAGTGATAACAGTGATCATGAAGAGAAGACAGTAATTGATATAGATAAAACAACATCAGAACGCACCAGGAGAGAAACCAGCAGGCCTATCAGATTTCGTCATTCAATTGGTTCTCCAAATCTATCATCCTTAACATCATCGCTTTCCACTACAGAAGACAAAGAGCAATCGAGCAGTGGTGGTCTGATTGGAAGTACAGAAGATAGAGAACGGCTCAGACAAGAAATAAATGATGCCTATCAGCAGTCATTAGAAATTGATCAGAGgaaagagaatcagaaagaacaggaagaaataaagaatcaaaggcaagcagatttaaaggaaagaaGGTTGTCATTTGTTCTACCCGAACCAGGTGTGGATGAAGATCATGTTGTAATTAGTGTACGGCACCCTCACATTGGCAACAAAGTGAGATTATTTAGAACTGGCTCCAAAATGCTAGATGTGTACAACTGGGTAGGTAGCCTTCACGAAATACCAGAACATTTCCAATTGATAGACTATAGTGCAAACAACATTGTAGAACCAGACCAGGAGGTATGTTCCTTAGCTTTAAATATGAATGAAGTTACAAATCCATTTATTTCTGCTGTACAAAAACCCAATGGTGAAAAAGAAACTGAAGAGCGTGTAGAAATTACGCAAGGTGAATGTATGACTCATTTACAAAAGGTGGAAAATTGCAGGAAAATTGCACTTGACAAATTGATACTCCAAGGAAGACATATAACTGTTTCATTTGATAATGTTTTTGGGGACTTAATTTCGCATTATCGCAAAATTGATATACTTTCAGAACGGATTAATTTGTCATTTTCTGAAGACTTCGGGGTTGGTGATGGTGCAACCAAAGATGTGTATGCAAAATGTTTTGATGAATTTTATAAACAGTGTGAAGGAGAGCGTCAAAAAGTACCAATAGCAACTATGGACGAAAATGACCTTGAAACCTTTGGTAAATTAATAACTCATGCCTTTATCCAACATGGACTTTTTCCATTACAAATTTCCAAGGCATCGATCGAATATTCTCTTTATGGAAATGTTGATGATAAAGACCTTGTTTCGACTTTCCTGTTATTTTTACCGGAAAATGAACGTGCTTTGTTTGAAAAATTTAGTGAAGTTCAACCTGTTCTTGATATTCTAACTGAGTATAAAATCTTTGATTCACCAAATGCTTCCAATATACTGGACTTGTGTAAGAAAGCAGCAAATGTTGCTCTTATACGTCTACCATGTTTTGGGGTAAATTCAATTGTAAAAGGAATGGGAAAGTTTTGGTCTGGATTTTCGCGTGAAATGTTCCATTCCATATATTCATGCATCGTACCGAATCCAGAGCGTGTGATAAATTCTTTATTAGTAAACGAATTGCAGCAAACAGAGGCCAAAATTGTAACATGGTTGCATAGATTTATCAGAAATTGTACACCTGCGCAACTGTTTTCGTTTGTTCGTTTCGTCACTGGTTCCCCTAACCTGTGGCCAGATGATATCATTAAAGTTGAGTTTGTGGATCAGGCAAAACAATATATCAGACCAACTACACAAACCTGTTTTAAAATTTTGCATTTACCAAGGCAATATGTGTCATACACAGAACTATCATCGAACATTATTGACAATATGGCTTTTGAAGAAAACTGGATAATTAGTGACAAATTGTGA

Transcript

HSymV2.0_g07.12075_t1

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00632	HECT	HECT-domain (ubiquitin-transferase)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR035983	Homologous_superfamily	HECT, E3 ligase catalytic domain	Interproscan
IPR050730	Family	UBX domain-containing protein	Interproscan
IPR000569	Domain	HECT domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23322	FAS-ASSOCIATED PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004842	Molecular Function	ubiquitin-protein transferase activity	Interproscan
GO:0005783	Cellular Component	endoplasmic reticulum	Interproscan
GO:0030433	Biological Process	obsolete ubiquitin-dependent ERAD pathway	Interproscan
GO:0043130	Molecular Function	ubiquitin binding	Interproscan