Gene detail

Detailed information of HSymV2.0_g07.12326_t1 in Hydractinia symbiolongicarpus

Genomic Location: HiC_scaffold_7:17562253...17567937
NR annotation: XP_012560848.2, proton-coupled amino acid transporter 1 [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

HSymV2.0_g07.12326_t1

TTTCAGATGTTATTATGAAGAAAAATATATAAAAAAGAAAAGAAAATAATCTTCCTACAATGTCACCACCAAATAAACGTTCGTTTGAAGACGAAGCTTCTGATGTCAACCTAAATGATCCATGTAGTGATGATGAAGAAGAAATATATCAAAAAGGAAACAGTGATGATGATTGGACAGAAATTAAAGCATCACCAAAAATTGGGTGCCTGCGGAACTTTACAGATTGCTCGAATGTATTCAAAGCTTTCATAGGGTCAGCATTGATTGGTCTGCCGTTTGCTGTGTTACAATCTGGTATTGTGCTGGCTATGGTGTGCATATTCTTAATTGCTTCTGCTACAGACCATTGTTGTGGACTAATTGTAAAATGTAAACGAATTGTTGTAGCAAATATTATAAAAGAAAAAATCGGTCGTGGCGAAAGCAAGGACGAAGTGAAACGTCAAGAAGAAATTCTTGGTAGAACTTTATCATTTGGTAGGATCGGGAAAGCTTGTTTAGGCCGACCTGGTTTATTAGCTGTAAATGTGTCTGTTATGGTGACACAGTTTGGATTTACTATTGGTTATTTTATATTTATGGGCAATACATTGCGTTCAGTTCTAAAACACTTTCTGGTACCCCATGCTGCATTGCAGAATGTTACAAATGCAACTATGATTCCAACACATAAACTAACGACAAAGATGTGGACTACCACAGTTGCAACTTTAACCACTGGAAATACTACACTGTTTAATACTACCGTGTTGCCTTTGTTTTCTGAATTTGACAACAGGACTATGACGCATTTTATTTATCACCATTTAAAAAATGCTGTTGAAGCAGTTAAGGATCCATTAAGCCAAACAAATCTTTTAGAAAATTCTTACATGGCGTTTGCAGTACTTCTGCTTATTCCATTGCCATTGTTGGTGTTGATTTCTTTTGTGAGAAATTTACGTAAACTTGGACCTGTTAGTGTTATTGCCAATGCATCCATTACTGGGGCATTTGGATTGACTGCTATATACATAGTTTCAACTATGAATGGTATTCCAAATAATATAGCCTTGGTGAAGCAAAAAACATTTCCAATATTCTTTGGTCAGGTTACTGGAGCATTTGAAGGGATTGGAACAGTGATCCCAATCGAAGGAAGCATGGCTGAAAATCGTAAAAAATATCCCTGTTTTTTGCATCTGTCGTTATTTCTACTTTCCGGCATCTTGGGCACGTTCGGTGTGGTTGGCTATCTTGCTTATGGCGAGAAAACATGCCAGATCGTAACGTCGAATCTCCATGGTGATGTTGCCATTGCATTGCAATTGCTGCTGTTCGTCGGCGTTCTTTTCACATACCCACTACAAATCTATCCGTGTATACAAATTACTGAGCGGATTTTCATCAAGCTAAGAACATGGCGAGCAGCAAAACGTACCAGATATCGAGTTTTGAATTCAAAAGTGCTGAGTAAAGATGAAGAAGAAAAGCTAATTGACAATGATGAAAAACCTGAGGTTGATATTTCCCCAGTTAAGCTGAAAACATGGGAAGGCAATTTGATTCGTGTATTTTTAATATCTTGCACGGCTTGCATAGCTCTCGTGTTTCGTTCACAATTCGCATACATAGCTGCGTTGACTGGTTCCATCGGAAGTTCCTTACTGTCTTATATTCTCCCCCCAATTTTCCATATCTCGTTGAGACGGCATGAAATGAGCAAGTGGGTGATCGCAAAAGATATTGGGTTGATCGTCTTTGGTGTTGTCGGCGGTCTCATGGGAATGAGTGTGACCATCCAGGAGATTGTCACTGCATTTAGCGCTGGTCATCCGAGACATTGTTAGCTAAAACAGGGAAGCAGGGTATGGTTTTAGCCTATGTTAACTAACTAAAGGTGTTTTAGGCTTACTGAATGGATGAGTGGAAGTTAATGATTAATTTATTTAGATTTCATACACATTAGGAATAGTGTCGCGCGGTTTCTAACTCTGTGCTAATACGGGGAAGAAACTGCCGACAAAAGCTTAATACCCTGTTTTCACTGTCCGATAGATAAAAAAAATACAAAGTAAtttttgtttatttttttatgt

Protein

Uniprot

Uniprot term	Description
F4ILY9	Amino acid transporter AVT3B OS=Arabidopsis thaliana OX=3702 GN=AVT3B PE=2 SV=1
Q9SVG0	Amino acid transporter AVT3C OS=Arabidopsis thaliana OX=3702 GN=AVT3C PE=1 SV=1
Q7Z2H8	Proton-coupled amino acid transporter 1 OS=Homo sapiens OX=9606 GN=SLC36A1 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01490	Aa_trans	Transmembrane amino acid transporter protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013057	Domain	Amino acid transporter, transmembrane domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22950	AMINO ACID TRANSPORTER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003333	Biological Process	amino acid transmembrane transport	Interproscan
GO:0005774	Cellular Component	vacuolar membrane	Interproscan
GO:0015179	Molecular Function	L-amino acid transmembrane transporter activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K14209	SLC36A, PAT; solute carrier family 36 (proton-coupled amino acid transporter)	-	Transporters	ko02000	deepkoala