Gene detail

Detailed information of HSymV2.0_g07.12641_t1 in Hydractinia symbiolongicarpus

Genomic Location: HiC_scaffold_7:21188528...21201809
NR annotation: XP_012559660.1, lipoyl synthase, mitochondrial-like [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

HSymV2.0_g07.12641_t1

ATGGCAACTCAAGAACATATGTTTTGGAAAATTGCAGTCTTGGATGCCACCAAGGTTGTATTTTCTTTTCCACCGAAGTGTTTCAATATAAAACCAAAACAGATATCGTTTAGTAATTCTGCTTCACGATCTTCATCAACACCAATTTGTGATCCTGTGGATACCACAGTTGAGGAATCTGCTACACAAGCAGAAAATTCAGataatattagacctgtttcaccaagtaataaagcgttagcgacaCCGGACAGCTTTTGGAAGAAAAGCTTTGAAACGCGGCCAGAGGATGCAGGAGCATATAAAAAAATGAAATCAATTCAATTAACCAAATTACGACCACTGATATTATCAAATATCAGGTGTTATTCTGCAGTACCCACCGACAAAAAAAACTATATACGTGATGGACCAAGTCTTGGAGATTTTATATCTGAGAGTGTGCAACAAGAAAATCTTGTCCGAAGTGTGGGAGGAAAACGACTGCGTTTACCTCCTTGGTTAAAAACTGAAATACCAATTGGACAAGATTATAAAAAGTTAAAAGGTACTTTGAGATCATTGAATTTAGCCACAGTGTGTGAGGAAGCTAAATGTCCAAATATTGGTGAGTGTTGGGGTGGTAAAGAAGGAACAGCTACAGCCACCATTATGATTTTAGGTGACACCTGTACAAGAGGTTGTAGATTTTGTTCTGTAAAAACTTCACGTAGACCACCACCTCCAGATCCTATGGAACCACTCAACACGGCAAAGGCTATTGCCAGCTGGAATTTAAATTATATTGTTTTGACGTCAGTAGATCGTGATGACATGGCAGATGGTGGCGCAGATCACTTTGCACAAACAGTTGAGGAAATTAAAAGACTGAACCCTACTTTACTTGTTGAATGTTTAACTCCAGATTTTGCAGGAGACATGGAATGTGTTTCTCGTGTTGCTAAATCAGGACTAGATGTATACGCACATAACATTGAAACTGTAGAAAGTCTACAGTGGTTTGTTAGAGACCCTCGAGCTAATTATAAACAAAGTATGGCTGTGCTAAAATATGTGAAAACAAAATTTCCCACAATTTTGACGAAATCAAGTATTATGGTTGGATTTGGTGAAAAACCAGAAGAAGTTGCACAGACTATGAAGGACTTACGTGAAATTGATGTGGATTGCCTTACAATCGGTCAATATATGCAGCCCACCAAAAGACATGCAAAAGTGCAAGAATATGTCCACCCCAAGCAATTTAAAGAATGGGAGGAGTTGGGGAGAGAGTTGGGTTTTGGTTACACAGCCAGTGGACCATTGCAATTAATTGTGATAGTGGAAGTTGAAATTGCAGGGCAAAACATAACAAAAAGAAGCTGGATTTTGTTATCCATCATGTTGACTATGAGATCAGATTCCGAATTACCAGAGTGTGAGACATATAATGAGGCACATAGTGCAAAGATACTCTACTTGATGAATCAACATCGAAAAGAAAACACAAAACTTTGCGATGTGGTTTTGCAGGTTAACAAGAAGAAATATCCTACCCATCGCTCTGTATTAGCTGCGTGTAGTCCATACTTTTTAGCTATGTTTAACGGTGATATGAAAGAAAGTGCAGAAAAAACTATTGTTTTAAAAGATGTCAAAGAAGATATTATAGAACTCATAATTGACTTTGTTTATACTGGAAATTTAAATGTAAATATTGAAAATGTGGAATCAATCTTGGAACATGCTACGCTACTGCAGTTTAGTGAAGTGAGATTGTTGGCTTGTAACTTTTTAGAACAACAGCTTGATCCAGAGAATTGTGTTGGTATCCGTAAATTTGTGCATTTACATCACTGTAAAAAATTTATTTGCACGGTGGACAATTTTATGAAAAAACATTTTTTACAGGTGTTAAATTCGGACGAATTTACATCGATACCTTTTAGCGTTTTAAAAGAAATTCTTTTAAGTGAAAAACTGAATGTAGATTGTGAGGAAAGAGTGTACAATTGCGTTTTAAAATGGATAAAACATGATCCTATTAAACGTGAACCAAAACTTTCAGAACTCTTAGCTGCAACTAGACTTTCATTGCTGGAAAAACAATTTTTAATGGATGTTGTTGATCAGATGCCACTGATTAAGAATGATCCGAAATGCAGAGATTTGCTTGATGAAGCTAAGAATTACCACTTACAACCAGAAAAACATGCAAAGTTAAGATCTCTACGAACAATACCCCGGCATTCTACATGTGGGCGATTATATGCCATTGGTGGAAAGAAAGATGTTTCAACAATTTTAAACAAGGTTGAAGCCTACAGTTTGTTTAATGATAAATGGAGTGAGGTGGCAAATCTAAGGAAGAATCGACAGCAGCTAAGTGTTTGTACACTAAATAAAAAGCTTTATGCCATTGCTGGTTCTGATGGTGTAAACAGACTGGATTCTGTTGAAGTTTATTCTCCTACAAAAAACAAGTGGAAAGAATGCTCTTCTTTACAGACATGTAGATCTGGTGCAGTTGGAAGTGCACTTCGTGACGCAATATTTGTTGCTGGAGGATATGATGGCAGATCTTGTTTAAATTCTGTGGAAAGGTTTGATCCAGTTGTTCAACGTTGGGATTTTGTGGCGTCTATGAATGTAGCAAGGAGCTTTCCAACCATATCTACCCTTGGAAACTGCCTTTATACTATTGGTGGAAATGATGGTGCAGCATTCTTGGACACATGCGAGTGTTTTGACCCTCTCATGAATAAATGGAGGTACATTGCACCAATGAAATTTCCACGTGCTGGACTGGGTTGTGCTGTACTGAATGGAATGCTTTATGTGGCTGGAGGTTTTGACGGTGTTGACTGCCTAAACTTAGTTGAAATGTATGAGCCACGGATGAATAAATGGACTGAAGTCAGTCCAATGAATCAGAAAAGAGATGGTCTATCGCTTATTTCGTATGGCGGTTACATTTATGCTATTGGTGGAATAGACGACTCTTGTTTTTTGAACACTGCGGAGTATTATGATCCAACTACTAATGTGTGGACAGAAACAGTTCCAATGATATTGCCACGTGCTTCAGCAGGATCCGCTGTGCTAATTGATGGTGTAAACATATAA

Transcript

HSymV2.0_g07.12641_t1

Protein

Uniprot

Gene family

Uniprot term	Description
Q5BIP7	Lipoyl synthase, mitochondrial OS=Bos taurus OX=9913 GN=LIAS PE=2 SV=1
C3Y3G4	Lipoyl synthase, mitochondrial OS=Branchiostoma floridae OX=7739 GN=BRAFLDRAFT_125969 PE=3 SV=1
Q6GQ48	Lipoyl synthase, mitochondrial OS=Xenopus laevis OX=8355 GN=lias PE=2 SV=1

Gene family	Subfamily
Transcription Factors Family	ZBTB

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07707	BACK	BTB And C-terminal Kelch	Domain	Interproscan
PF01344	Kelch_1	Kelch motif	Repeat	Interproscan
PF16881	LIAS_N	N-terminal domain of lipoyl synthase of Radical_SAM family	Family	Interproscan
PF04055	Radical_SAM	Radical SAM superfamily	Domain	Interproscan
PF00651	BTB	BTB/POZ domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013785	Homologous_superfamily	Aldolase-type TIM barrel	Interproscan
IPR011705	Domain	BTB/Kelch-associated	Interproscan
IPR015915	Homologous_superfamily	Kelch-type beta propeller	Interproscan
IPR006652	Repeat	Kelch repeat type 1	Interproscan
IPR011333	Homologous_superfamily	SKP1/BTB/POZ domain superfamily	Interproscan
IPR003698	Family	Lipoyl synthase	Interproscan
IPR007197	Domain	Radical SAM	Interproscan
IPR006638	Domain	Elp3/MiaA/NifB-like, radical SAM core domain	Interproscan
IPR000210	Domain	BTB/POZ domain	Interproscan
IPR031691	Domain	Lipoyl synthase, N-terminal	Interproscan
IPR011043	Homologous_superfamily	Galactose oxidase/kelch, beta-propeller	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10949	LIPOYL SYNTHASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005739	Cellular Component	mitochondrion	Interproscan
GO:0009107	Biological Process	lipoate biosynthetic process	Interproscan
GO:0016992	Molecular Function	lipoate synthase activity	Interproscan
GO:0051539	Molecular Function	4 iron, 4 sulfur cluster binding	Interproscan
GO:0003824	Molecular Function	catalytic activity	Interproscan
GO:0051536	Molecular Function	iron-sulfur cluster binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K10450	KLHL12, C3IP1; kelch-like protein 12	-	Ubiquitin system	ko04121	deepkoala