Gene detail

Detailed information of HSymV2.0_g07.12658_t1 in Hydractinia symbiolongicarpus

Genomic Location: HiC_scaffold_7:21393929...21404547
NR annotation: KRY73553.1, 4-aminobutyrate aminotransferase, mitochondrial [Trichinella pseudospiralis]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

HSymV2.0_g07.12658_t1

AAGCGCGTCGATGTAAAAAAAGCAGGACACTGCATTTTAGTGCAAAATGCCAACACCAACAACAACAAACTTGAAGGACTTGAAGGACTTGCGTTTTGTTTGCCAAAAAACATCTAAATTTTTCTTTGGTTTCGCAAATAGTGACGATAGGACCAAGCTGTGTTTGCAACAGGACTATACTTTTTGAGTAAAATTTTAGTGGAAGTTCATCAGCTGAATGGAACAAAGCTTCCCTCAAGCTTTTCGTATCCAATCCCGAAAATTGAAGCAAAGTTCCAAGTGCAGAGTTTATATATAGATCCTTTAGCCGGAAGTCTACACAAGTTGCTGTGATGATAGGAATCAAACTTACAAGGAAACTTTTTCAGTTCAATTTTACTCCTAAATTTGCTTCAAAATTGTCAATGAGAAGTGTTTATAATGGCTTTTGTAAGGAAGATGGCATCATCACCAGACCAGATGTGAAAACTTCATTTGTTTATGATAATACTCTGAACACTAGTCAGTTGAAAAGAATTGATTACACAAAATGTGTTGGAAATTATGTTGTTGATAACTATGAAAATACACTACTGGATTTATATCAACAGAACGGATCCCTGCCTCTAGGTTACAACCATCCCAGCCTAGCCAACGCCGTCCAGTCGCTGGAAATGACAACGGCATACACCAACTTTGGCCCAAATTCATTTCCACCTGATAGATATTTTCAGTTGTTGGATCAAACATTGCTGGCAGTTGCTCCAAGTAGTTTATCATGTGTGCAAACAGTGGATACCATGTCTAATCCCATAATGCATGCAGTTAATGCAGCTGTAACTAGATACCAAGCATTGCATCAAGGAATATGGGATTCAACATATAAAGGTTTTCATCATGAAGAAAGAGTATCTGCCAAATGTTTTTCTGTTCTTGCATTTCAAGGCTCCTCACACAACTTGCCCATAGTACCCTTCCATATGATGTACGTTCCATTTCCAAAATTAAAATATCCATTTGATGAATACATTATGTACAACAGAGCAGAAGAAAGCCAATGTTTAGAAAAGTGTTTTGAAACAATCAAAGATTGTGCTAATCAATTAAAGCATGCAGCTGCTTTTGTTGTTGACCCAACCTTGCTTTGTGAAGGTGACGTTTCACCAGAATTTTACAACTGTCTTCGAACAATATGTGAAGAGTTTGATGTGGCTTTCATTGTGAATGAAGTTGATACAGGTTTAGGTGTTACTGGAAAATTTTGGGCTCATCAACATTGGAATTTGACAAAATCACCAGATGTTGTAGTGTTTGGTAAGAAGATGATGATGTCTGGATTTTATTTTCGTCCTGATTTTCATCCGAACCAGTCATTCTCAACGATATGCGGTTCAACAGACGAACCGGCCAACTTGGTATTGTTGGAGACTATATTGCGCACAATATGTGAAGACAATTTATTTGAACGTACCCACGAAGCTTCTCTTGTACTGGCTACAAACTGCAAAATGTTGGAGGAATCTTACCCGGATTTGATTGAATCTATTCACTGTCATGGAACATTATGCGCAGTGACCTTTCTTGATGAGTTGGTTAGCAAAGAAGCAGAGTTGATGTTCCTCAATGCTGGTTTGCATTTTGGTCGAACAAACAGCAGAGCCCTGGTATCGAGGCCAGCGTTAATCTTTACAGGCGAGCATGCGCAGTACACACATGATCTGTTAGACACGACGTTGGGCAAGCTAAGCAGAGACTTAGCCCGTAAAAATCGAAAAGTATAAAACATTGTTTATGACGTTTGATTTATCCCTAAAACAAATTTGATTCAGATTGTATATTGGAGGTTATGTAAATCAGTCGAATCTTTTTGGTAGACACGGAGTGGCCGCAATACAGATGTTTCTTTAACAGGAATAATACCGCGAAAATCTGGTGTCTACTACTCTATGGTTCGACCATTTTATTTTTACGTGTGATTTTTTTACACTCTTTTTTTACACTCTCttttagtatactctctaggggtaacaaccggtatttgctagagattaaagagagtttgttcataatgcgggatagtccccagttgaataacaacattagatctgctccattgtatttatacaattagtatttaatatgtaactatggttgctgttaaacttgtatacatttaggagaacattgtacgtttttgattgcttgaaaatgggtgtgtgagcatc

Protein

Uniprot

Uniprot term	Description
P80404	4-aminobutyrate aminotransferase, mitochondrial OS=Homo sapiens OX=9606 GN=ABAT PE=1 SV=3
P61922	4-aminobutyrate aminotransferase, mitochondrial OS=Mus musculus OX=10090 GN=Abat PE=1 SV=1
P50554	4-aminobutyrate aminotransferase, mitochondrial OS=Rattus norvegicus OX=10116 GN=Abat PE=1 SV=3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00202	Aminotran_3	Aminotransferase class-III	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005814	Family	Aminotransferase class-III	Interproscan
IPR015424	Homologous_superfamily	Pyridoxal phosphate-dependent transferase	Interproscan
IPR015422	Homologous_superfamily	Pyridoxal phosphate-dependent transferase, small domain	Interproscan
IPR015421	Homologous_superfamily	Pyridoxal phosphate-dependent transferase, major domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43206	AMINOTRANSFERASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0008483	Molecular Function	transaminase activity	Interproscan
GO:0030170	Molecular Function	pyridoxal phosphate binding	Interproscan
GO:0003867	Molecular Function	obsolete 4-aminobutyrate transaminase activity	Interproscan
GO:0005739	Cellular Component	mitochondrion	Interproscan
GO:0009450	Biological Process	gamma-aminobutyric acid catabolic process	Interproscan