Detailed information of HSymV2.0_g08.12882_t1 in Hydractinia symbiolongicarpus

Genomic Location: HiC_scaffold_8:2677987...2700050
NR annotation: XP_002160573.1, E3 ubiquitin-protein ligase MYLIP [Hydra vulgaris]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q13148TAR DNA-binding protein 43 OS=Homo sapiens OX=9606 GN=TARDBP PE=1 SV=1
Q5R5W2TAR DNA-binding protein 43 OS=Pongo abelii OX=9601 GN=TARDBP PE=2 SV=1
Q5ZLN5TAR DNA-binding protein 43 OS=Gallus gallus OX=9031 GN=TARDBP PE=2 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF13920zf-C3HC4_3Zinc finger, C3HC4 type (RING finger)DomainInterproscan
PF00076RRM_1RNA recognition motifDomainInterproscan
PF09379FERM_NFERM N-terminal domain DomainInterproscan
PF09380FERM_CFERM C-terminal PH-like domainDomainInterproscan
PF00373FERM_MFERM central domainDomainInterproscan
PF18694TDP43_NTAR DNA-binding protein 43, N-terminal domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR035979Homologous_superfamilyRNA-binding domain superfamilyInterproscan
IPR001841DomainZinc finger, RING-typeInterproscan
IPR000299DomainFERM domainInterproscan
IPR000504DomainRNA recognition motif domainInterproscan
IPR012677Homologous_superfamilyNucleotide-binding alpha-beta plait domain superfamilyInterproscan
IPR029071Homologous_superfamilyUbiquitin-like domain superfamilyInterproscan
IPR019749DomainBand 4.1 domainInterproscan
IPR013083Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan
IPR041105DomainTAR DNA-binding protein 43, N-terminalInterproscan
IPR035963Homologous_superfamilyFERM superfamily, second domainInterproscan
IPR014352Homologous_superfamilyFERM/acyl-CoA-binding protein superfamilyInterproscan
IPR018979DomainFERM, N-terminalInterproscan
IPR019748DomainFERM central domainInterproscan
IPR018980DomainFERM, C-terminal PH-like domainInterproscan
IPR011993Homologous_superfamilyPH-like domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR48033RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEINInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0005856Cellular ComponentcytoskeletonInterproscan
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0000790Cellular ComponentchromatinInterproscan
GO:0005654Cellular ComponentnucleoplasmInterproscan
GO:0010468Biological Processregulation of gene expressionInterproscan

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