Detailed information of HSymV2.0_g08.13210_t1 in Hydractinia symbiolongicarpus

Genomic Location: HiC_scaffold_8:6717182...6728973
NR annotation: XP_002167931.2, CUGBP Elav-like family member 2 isoform X3 [Hydra vulgaris]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q91579CUGBP Elav-like family member 3-A OS=Xenopus laevis OX=8355 GN=tnrc4-a PE=2 SV=2
Q28HE9CUGBP Elav-like family member 1 OS=Xenopus tropicalis OX=8364 GN=celf1 PE=2 SV=1
A4IIM2CUGBP Elav-like family member 2 OS=Xenopus tropicalis OX=8364 GN=celf2 PE=2 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00076RRM_1RNA recognition motifDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR000504DomainRNA recognition motif domainInterproscan
IPR012677Homologous_superfamilyNucleotide-binding alpha-beta plait domain superfamilyInterproscan
IPR035979Homologous_superfamilyRNA-binding domain superfamilyInterproscan
IPR002343FamilyParaneoplastic encephalomyelitis antigenInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR24012RNA BINDING PROTEINInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:1990904Cellular Componentribonucleoprotein complexInterproscan
GO:0000381Biological Processregulation of alternative mRNA splicing, via spliceosomeInterproscan
GO:0003729Molecular FunctionmRNA bindingInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0006376Biological ProcessmRNA splice site recognitionInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K13207CUGBP, BRUNOL, CELF; CUG-BP- and ETR3-like factor-Spliceosomeko03041deepkoala

TOP