Gene detail

Detailed information of HSymV2.0_g08.13681_t1 in Hydractinia symbiolongicarpus

Genomic Location: HiC_scaffold_8:12069024...12079208
NR annotation: XP_012557176.2, coiled-coil domain-containing protein 22 homolog [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

HSymV2.0_g08.13681_t1

gcgcgcatcaaataacattacgtaatgctacccaagaaagatgcgtgcgcagaaatggaggtaacgaaacattagtgcagaaaaacacaaggctagcaaagcgaaaaaaagaaaaagatcgactaactgctgtgttataggattcatgaattcatagccaatactcctcggaaaaatcatagttactaaaatggaaaaatgaaaagagAATTGTTGCCAGCATGGAAGAAGTTGATAATATAATAATACATTCACTGCAACAAATTGGATGTGATATTTCTGACGATGTCATGACACTGCGAGAGTTTACAGTGGAGATGATTGTCCAAGCTGCATCAAAATGTCTTGATCACATCAGTGAGCAATATAACATTCCATCAGTTTTACCACCAAGTATGTCTGCACGATTTAGGATTGGATCTAGTTTAGCTGCAGCTTGTCAGGAACTTGGCTTTAAAGGAGAGATTGGCTATCAAACATTTCTGTATGCCAATGAACATGAGTTACGTAAAATATTAATGTTTTTGATTGAAAAAATACCAAAAGAAACATCAGACACTAACGATGAACCGCTAGGAAGTGGTGTCTTATTGAATAATCGCATAGCAGCTGAATTAAAACGTCAGTTGTCTGTTCCTTGGACCCCAGCTTATTGTAAGAAGAAAAACATTCAAAATTTAGATAATGATGAATGGTTTTTTCAGGGCACTTCATCATTTCATCATATCAATACATGTCTTCTAAAGTATCCAGTTGGAATAAGCAGTGAAAAAATCAGCAAAGAAGAACAATCTGCATTTGATAGCATACCTTTCGTCACTTCACAGCCGACTGATCAGAGAGATATCTATATTTCATTGATTGAGGAAAATAAACGACTAGTTACTGAAGAGCACGAATGGGAGAACGAATGGAATCAAAGTGGGATGGCAACAAGACTTAGTAAAGAGGAGTATAAAAAGCAGAAAAGAGAGAAGCTAATGAAGCGCATCAAGCAAAAAATAATAGCCAACTGTCAAAGAAATACCAATTTAAAAACTGGTGCAGTAGGATTAAAAGATCTATTGGACTCAATTGCAGGAAGAGACTCCAAGAAAACCGGCAAAGGATCAAGATTTACTCATGCTGAAAAGCTTCAATTTGCACAGGACGAAGAAAAAGTGAATGCAGAAATTGTTAGTAAGCAGGAAGAAATGAATACTACAGAAACTGAGGAGGAACGTCAGAAGAAGAAGGAAGAAGAGCTAAAAACATTGAGAGATCAACTTAGTGAGCTTACTCAACAGTTTCAGAACATTTTGCTGGAGAAAAAGCAAGTGACTGCCCAAAAACAGCAGGTTGACGAACAATCAAGAAGTTTAGAAACAACAAACAAGGAGGAAGAAGCGGCATTTCGAGTGAAGAAGAAAACTTTCGATCTGTTACCGAATGCTGAGGAGAATATGAGCAAGTTGCAAAAAATCATCGAAAGTAGCAGTCAAAGATTAGTTAACTTGAATCAACAATGGGAAAAACACCGTGCTCCACTTATCGAAAAATACAGACAGTTAAAAGAGGAAAGCAAATCCAGAACGTCCGAAGTCGAAACTAAAATCGAACAGGTGCGTTCATTGCGGGATAAAATGAAAAGTGCAGCAGACGAAACGCGTGGAAAGGAAGAGCTTCTGAAACAACTGGCCGCTGAGTTTGAGCGCATGTCGAAGAATGTTAACAGATCTTCGTATACGAAAAGAATTTTAGAAATCGTTGGGAATATTAAAAAGCAGAAAGAAGAAATTGCAAAGGTTTTGCTGGACACGAAAGCTCTTCAAAAAGATATTAATTTTCTCACTGGCAAACTTGATCGTACGTTTACTGTCACGGATGAATTGATTTTCAAGGACGCGAAAAAAGATGAGTTCAGCAGAAAAGCCTACAAATTATTAGCTAACTTGCACGAGGGCTTTGGAAGTCTTGTTCAAACAGTTGAAGAAACAGGCGTGATTATGCGTGAGATTCGCGATTTAGAAGAACAAGTCGATAACATCAACGAAAACGAAATTAATGAGAATCTGGAGAAAATCAGTTCTGATCTAAACCAAATGAAGAAAGAGAATAATGAAAACATCAACAGGATTAAAAGAAAAAATAGATAA

Protein

Uniprot

Uniprot term	Description
A7RNG8	Coiled-coil domain-containing protein 22 homolog OS=Nematostella vectensis OX=45351 GN=v1g180167 PE=3 SV=1
Q4V909	Coiled-coil domain-containing protein 22 OS=Danio rerio OX=7955 GN=ccdc22 PE=2 SV=1
Q28G12	Coiled-coil domain-containing protein 22 OS=Xenopus tropicalis OX=8364 GN=ccdc22 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF21674	CCDC22_N	CCDC22 protein N-terminal domain	Domain	Interproscan
PF05667	CCDC22_CC	CCDC22 protein coiled-coil region	Coiled-coil	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR048349	Domain	CCDC22, N-terminal domain	Interproscan
IPR048348	Domain	CCDC22, coiled-coil domain	Interproscan
IPR008530	Family	Coiled-coil domain-containing protein 22	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15668	JM1 PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0097602	Molecular Function	cullin family protein binding	Interproscan
GO:2000060	Biological Process	positive regulation of ubiquitin-dependent protein catabolic process	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K23343	CCDC22; coiled-coil domain-containing protein 22	-	Ubiquitin system	ko04121	deepkoala