Gene detail

Detailed information of HSymV2.0_g08.13689_t1 in Hydractinia symbiolongicarpus

Genomic Location: HiC_scaffold_8:12143343...12158820
NR annotation: XP_047123637.1, electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

HSymV2.0_g08.13689_t1

ACGGTGGACTTGCTAGAAGTAGTAACGCTGCATTTTGTGTTTTACTACTTTCCGTTACAATCGTTCCAAAGTCCAAAGGTTCAGTGATGTAGCTAGCTGGCAACAACAACAACCCAGCAAGCAGAAAAAAACGAAAGCTGTGATGTTTCATCTACCAAGAAAAAATATTTTTAAATTTACCCAGTCCATTGGGCGTCATGTACGTAATATATCAACAAGCAGTAGAAGAAATAAAAGAATTACAACGCATTACTCCATTGTTTCACGGGAAACAGATCCAAGATGGGCTGGTGTTGATATGGAGCGCGTTGCTGATGAAACAGATGTTGTGATTGTTGGTGGTGGACCAGCTGGAATGTGTTCTGCTATCAAATTAAAACAGCTTGCACAAGAACATGGTGTGGATCTTAGAGTATGTGTTGTTGAAAAGGCTTCAGAAATTGGAGCGCACACTTTATCAGGAGCTTGCATTGAAATAAGTGCTTTAGAAGAACTGTTACCTGATTGGAAGGATAGAAATGCGCCACTTAATACACCAGTAACAAAAGATAAAATGGGATACCTCACAGAAAATAAATACATCTCATTACCTGTTTTTAAAGGTTTGCCCATGTATAACCATGGAAATTATTTGGTTAGACTTGGTCACTTTGTGAAGTGGCTGGGAGAACAAGCCGAAGAACTTGAAGTTGAAGTTTATCCAGGTATTGCAGCCAGTGAGGTTTTATATCATGAAGATGGTAGTGTAAAAGGCATTGCAACAGCAGATGTTGGAATAAGCAAAGATGGCTCCCCAAAGGATACGTTTGAACGTGGAATGGAATTGCATGCCAAAGTCACCATATTTGCTGAAGGTTGCCATGGACACTTGGCGAAGCAATTGTTTCAACGTTTCAACTTACGAGAAAATTCTTGTCAACAAACATACGGCATTGGTTTGAAAGAGTTGTGGGAGATTGATCCAAGCAAACACGAGCCAGGGCTTGTTGTTCATACCGCAGGATGGCCTTTGCCACGTGACACATATGGCGGTTCGTTCTTGTATCACCTGGATGAAGGCCCATTAGTCTCCTGTGGCTTTGTGGTTGGTCTTGACTACAGCAATCCCTATCTTAGTCCTTTTCAAGAGTTTCAGAAATGGAAAACGCATCCGTCCATTCGTACTTATTTCGAAGGCGGTACTCGGATCGCATATGGAGCACGTGCACTAAACGAAGGCGGTTTTCAGTCCTTACCCAAATTATCATTCCCTGGTGGTTGCGTGATTGGCTGCAGTGCTGGCTTTATGAATGTCGCCAAAATTAAAGGAACGCACGGTGCTATGAAGAGCGGAACACTAGCCGCTGAGGCGGTGTTCGAAGCCATCACAGATGAACAAAATCTTGAAAAAACAACAGGCCTGGTACCAAGTAGTTATGACTCAAAATTCAAAGAAAGTTGGTTGCACAAGGAATTATATAGTGCCCGAAACATACGTCCGTCGTTCAACAATCCGTTTAAAATTTTTGGTACAATGATCTACACTGGACTCTTTTATTGGCTTGGTGGCGGCCGTGAACCTTGGACACTAAAGCATCACGGTAATGATGCCGAACATTTAAAGCCTGCAGCCGAGTGCTCGTCCATTGAGTATCCAAAACCTGACGGAAAATTAACTTTTGATCTGTTATCGTCTGTGTCTTTAAGTGGTACGAACCACGACCATGATCAACCGGCGCATTTGACTTTGAAAAATGACGATATACCAAAGGAAAGAAACTTAGCAGTATTTGATGGGCCAGAACAACGGTTTTGTCCGGCCGGTGTATATGAATATGTAGATGATGAAGAGGAAGGGGGGCGTCGTCTGCAAATTAATGCTCAAAATTGTGTACATTGTAAAACATGCGATATAAAAGACCCAAGCCAGAATATTAATTGGGTTGTACCAGAAAGTGGAGGCGGCCCTGCATACAACGGCATGTAAACAATTAGTAGGAAGACATTTTTGTGTATAAACTTTTTTCATGGTGTGTTATTTTAATATAAAGTTTATTTCTTATTGCTATATTTTTTAGTTGAAGAAAAATTATAATCAGATATGATCCTAATATTGTACGTAGTTTGTTCTGGTGAAATTCTAACCAATGGGAATGTGTAATAATAATATTAAATGGTTATCAGATAA

Protein

Uniprot

Uniprot term	Description
P55931	Electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial OS=Sus scrofa OX=9823 GN=ETFDH PE=1 SV=2
Q921G7	Electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial OS=Mus musculus OX=10090 GN=Etfdh PE=1 SV=1
Q2KIG0	Electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial OS=Bos taurus OX=9913 GN=ETFDH PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF21162	ETFQO_UQ-bd	ETF-QO, ubiquinone-binding	Domain	Interproscan
PF05187	ETF_QO	Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S	Family	Interproscan
PF00890	FAD_binding_2	FAD binding domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR049398	Domain	ETF-QO/FixC, ubiquinone-binding	Interproscan
IPR036188	Homologous_superfamily	FAD/NAD(P)-binding domain superfamily	Interproscan
IPR007859	Domain	ETF-QO/FixX, C-terminal domain	Interproscan
IPR040156	Family	Electron transfer flavoprotein-ubiquinone oxidoreductase	Interproscan
IPR003953	Domain	FAD-dependent oxidoreductase 2, FAD binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10617	ELECTRON TRANSFER FLAVOPROTEIN-UBIQUINONE OXIDOREDUCTASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0051536	Molecular Function	iron-sulfur cluster binding	Interproscan
GO:0004174	Molecular Function	electron-transferring-flavoprotein dehydrogenase activity	Interproscan
GO:0022900	Biological Process	electron transport chain	Interproscan
GO:0031305	Cellular Component	obsolete integral component of mitochondrial inner membrane	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K00311	ETFDH; electron-transferring-flavoprotein dehydrogenase	EC:1.5.5.1	Enzymes with EC numbers	-	deepkoala