Gene detail

Detailed information of HSymV2.0_g08.14573_t1 in Hydractinia symbiolongicarpus

Genomic Location: HiC_scaffold_8:26128218...26135889
NR annotation: XP_033250303.1, fibulin-2 isoform X2 [Drosophila miranda]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

HSymV2.0_g08.14573_t1

AGGAGAGCATTTACTTTAGAAAAAAATTTGTGACGTTCTGCGAAGTTTTGAATATCCTGTTATGAGAATGTTACAATGAAATCGATTTCTTGTCCCTGCATCGAAGAGATGATGTTGATTTTACTCTTGTTAACCTTAGTTGCTCTTGCTCATTCCCAAGAACCATCAACTTGTTGCACGAAAGGGTATCTAAAGGGCGCCTCTGTTCTAACAGATGATATCAACTGCCACGCCCCTTCTTCAATCGGAGATGTTTTCTCATCAAAGTCTCTAAAATTGATGTGCGTTGGCTTTTACGAGCAATGTTGCCGATCTACTGCAAGTACTTTATTTTGCCGGATGGGGGAAAAACTGGCCATGGCTAATCAGTTATGTACGAGATCAAGCAGGATAGGCGGTGAAAGCAAATTGACTTGTTGCGACTGCTGTAAACGAGGAGCACGATTAGCTCGTGAAGGAGTGTCTTGTAACCAAACCCAAGAAGATCGGCTGTGCACAGAAGCATTCAAATCGTGTTGCTTAACAGTGAAGAAAACTACAGATTTGAAAAATTCGAGAAAATATTGCTCAGACATCAAGTGTGATTCAAAATCCACATCAAGCTGTGTGGAAACAGAAAAAGGACCTCGATGTCTGTGTAAGCAGGGATATGCTACCACCAACAATGGATTAAGCTGCACAGATATCGACGAATGTCAGAAGAAGAATTCCTGCCCTGGAACTGCATGCACAAACATACCTGGAAGTTATAAATGCGGTTGTGAAGATGGATTTATGGTGGTAAATAGAAAATGTGTTAAAAAGAACAAAAGTTGTAAAAAGGGTTATGAGGTTAAAAATGGCAAATGTGTGGACATTGACGAATGCTTAAGTGGAAAACACAGATGTTCCACTGGATCGTTCTGTATGAACACAGACGGTGATTATGCCTGTTTTCGGAGATGCCAGTATCCTCGTTTCCAGGTTATTAAGGCAGGGGTATGCATAGATGTGGATGAATGTAAATTGGGATTAGATGACTGTGGTCGAAACTATGAGTGCGAAAACACCGTAGGTTTGTTTAAATGCAATCTGGTCAGATGTAATGAAGGCTACAGACTAGTTGATGGATACTGCGAAGATATCGACGAATGTCAAAACAAAAGCATCTGCGGTGAAGCTCATCAAGGCTTATGCAGAAATGCTGACGGAACATATTATTGTGACTGTCAAAGCGGATATGCAGTTAACTCGATCACAAAAAAATGTGCCGATATTGATGAGTGCAAAATCAATCATGGATATTGCATCTATCAATGCACGAACAGCGAGGGCTCCTATAGATGCACATGTCCTGCAGGATACGAAGCGCGAGGAAGGTTTTGCTCTGATATCGACGAGTGCTCAAGAAATCCATGTCCAAGCTCTGATTTTTGTTTCAACACATTTGGAAGTTATGCATGTATCAATCAATCGTGTCCGAACAAATATTTCGTAAAGACATCTCGGAAATATGATGAGCCAGCATCGTGTTTGAAAAAGGATTGTAAATGGCAAGCGGAATGCGGGAAAATAAAGTTAAAATCTGTTAAAAGAACAGCCTACAAGTTTTATAAGAACGTTGCTCATTCCGGTTTTATTTTCCGATATTGGATGAGTTTCGATCGAAGGTATTATCGAGTGACATCACGCTTTGTTAAAGGTAACGAAGAAGGGTATTTCTACATCCAAAATATGGCTAAAAATGAGCTGAGAATTATCAATCAAAAGAAAATAACGGGACCGAAAAAATTCCATCTTGAAATGCATGTGGATATTAACAGCAAACTCGGCGACACCATATGGAAATACGTATATCATTTTTATGTTTACGTATCCGCTTATGACTTTGCTTGATCTCCCAGCTCTTACCAAACTAACAGAAACAACGTTTGGATAATCAAGATTAACACGAAGTAGAAGTTTTGTGTGTTTTTGTCAGCCTCGTTTTCATGGCTTTTTGTTTTTTATCAGGCGCTTTTTTAATAAAACTAATGCAAAACAT

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12662	cEGF	Complement Clr-like EGF-like	Domain	Interproscan
PF07645	EGF_CA	Calcium-binding EGF domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000742	Domain	EGF-like domain	Interproscan
IPR000020	Domain	Anaphylatoxin/fibulin	Interproscan
IPR009030	Homologous_superfamily	Growth factor receptor cysteine-rich domain superfamily	Interproscan
IPR001881	Domain	EGF-like calcium-binding domain	Interproscan
IPR000152	PTM	EGF-type aspartate/asparagine hydroxylation site	Interproscan
IPR026823	Domain	Complement Clr-like EGF domain	Interproscan
IPR018097	Conserved_site	EGF-like calcium-binding, conserved site	Interproscan
IPR049883	Domain	NOTCH1 EGF-like calcium-binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24039	FIBRILLIN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005576	Cellular Component	extracellular region	Interproscan
GO:0005509	Molecular Function	calcium ion binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K17307	FBLN1_2; fibulin 1/2	-	Exosome	ko04147	deepkoala