Detailed information of HSymV2.0_g08.14667_t1 in Hydractinia symbiolongicarpus

Genomic Location: HiC_scaffold_8:27210306...27221864
NR annotation: XP_047124249.1, transcription factor SPT20 homolog isoform X1 [Hydra vulgaris]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q9D753Exosome complex component RRP43 OS=Mus musculus OX=10090 GN=Exosc8 PE=1 SV=1
Q96B26Exosome complex component RRP43 OS=Homo sapiens OX=9606 GN=EXOSC8 PE=1 SV=1
Q2KHU3Exosome complex component RRP43 OS=Bos taurus OX=9913 GN=EXOSC8 PE=2 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01138RNase_PH3' exoribonuclease family, domain 1DomainInterproscan
PF03725RNase_PH_C3' exoribonuclease family, domain 2DomainInterproscan
PF12090Spt20_SEPSpt20, SEP domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR036345Homologous_superfamilyExoribonuclease, PH domain 2 superfamilyInterproscan
IPR001247DomainExoribonuclease, phosphorolytic domain 1Interproscan
IPR033196FamilyExosome complex component Rrp43Interproscan
IPR021950FamilyTranscription factor Spt20Interproscan
IPR015847DomainExoribonuclease, phosphorolytic domain 2Interproscan
IPR046468DomainSpt20-like, SEP domainInterproscan
IPR027408Homologous_superfamilyPNPase/RNase PH domain superfamilyInterproscan
IPR020568Homologous_superfamilyRibosomal protein uS5 domain 2-type superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR13526TRANSCRIPTION FACTOR SPT20 HOMOLOGInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0000178Cellular Componentexosome (RNase complex)Interproscan
GO:0006396Biological ProcessRNA processingInterproscan
GO:0006401Biological ProcessRNA catabolic processInterproscan
GO:0000124Cellular ComponentSAGA complexInterproscan
GO:0003712Molecular Functiontranscription coregulator activityInterproscan
GO:0006357Biological Processregulation of transcription by RNA polymerase IIInterproscan

TOP