Gene detail

Detailed information of HSymV2.0_g09.14935_t1 in Hydractinia symbiolongicarpus

Genomic Location: HiC_scaffold_9:2608746...2627545
NR annotation: XP_002158999.1, delta(8)-fatty-acid desaturase 2 [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

HSymV2.0_g09.14935_t1

ATGGCGGCCGAAGTGGTGGGAGGTGGAAAGGATGAAAATACACCAGAAGAGACCTTTAACTCCAATGGAAATCTAAGCATAAATTTAGACGCTTCTTCATTAAACGAAAGTTCAGTTACTAGAAAGAACGAAGAAATATTTAAACTTGGCTTTAATTTAAATGACTTATACAAAATCTCATTGCAGTATTACAGAAAAGAGAAAGACTTCCTACCACTAACATACCATGACAAAGTTCAGCTAGTTGCACTTTGGAAACAGATTTCGTGTGGAAAATATGACGATTCCAAAGTGTCGGAAATAGGTTACTTTGATGTGATTGGCAATGATAGAAGAAAAGCATGGGGAGCTCTTGCCGATATGGCACCAGATGTTGCAAAAGAGAAATTTTGCAATACGCTTGAAAAAAATTGTCCCAACTATACAGAATTCGTAGCTAACAAAAAACGCGAAATTGAAGCGGAGATCGAaagaaaacgaaaattagaagaagagagaaaaagaaaagaagaagaggaacgcaggaggagagaagaagaggaaaaaattagaagagaggaagaagaGCGGATTAGACTGTCGTTGGAAACTGAAAGATTGAAGTTAAAGGAGGAGCAAGAAGAAGCAAGACATCAAGCAATGGCCGAGCAGGAGCTAAAAGAGAATCGCAGAACAGATGCTCCGAAATTAGTTACTCCGCAGATTAACGGTGCAACTACGGGAAGAACTATCGCACCAGCGTCGTTGTGGACTCGTCCCAAACTACAAGAATTTATCAATCACGTAAAAAGAGATGCAAGTTCTGTACTAGTGGTTGGGCGAGGAGAAACAGTCACTATACGAGTGCCCACTCACGAAAATGGTTCGTGTTTATTTTGGGAATTCGCTACGGAATCCTACGATGTCGGTTTCGGTGTGTATTTCGAATGGTCAACTTCCAAATCGCAAGCAATAAGCGTGAAAGTAAACGATTCAGACAACGACGAGACAAACACCGCCGACGAAGTGAAAACGAACGGAGTTGAACAAATAGTCGTTAACGAAAACGAAAACAATGTTGAAGTAATGGATAAACCGAATACGGACGAAGTTTTGCCAGTGCTTCGTAGAAACTCGCATGCAGAGGTCATAGTAGGCTCTCACATCAGGAAAGTAAAAGGGGTGTTTGAAGGTAGAAGCATGGATGTTGAAAATCTTAAGACATTCTCCATTGAAGAGATTTCAAAGCATAACACTGAGGAGGACTGTTGGATTATTATTAAAAATAAAGTTTATGACATTACTAAATGGGTTCCAAAGCATCCTGGTGGATCCTCAATTTTATTTAACTTTGCTGGCAAAGACTGCAGTGATGAATTTAAAATATTTCACTTGCATTCAAATCATGTTCTCTTGAAATCATTTTTGGTTGGCAAAGTTTCAAAAGAGGATTGGAAAGAGCAATCAACGTTAGCACAAGATTTTGAACTGTTACATGACAAACTAAAGAAAAATAATGCATTTAAACCAGATTATTGGTTTTATTTTCGAAAGGGTTTAATAATCTTATCATTGTTCATTGCATCCATCACACTCCTTCTCAGCTCATCTAGCATAATATCATGCTTTGTAAGTGCTGTGTGTCTTGGTTTATTTTGGCAGCAACTTGCATTTATTGGACACGACTTAGGTCACCATGTTGTTACACATAATCGAAAATTGGATGACCAAATTGCAATTTTTGTGGGAAATCTATTGCAAGGAATAAGCGTTGAGTGGTGGAAACACAGTCATAACACGCATCATACCGTCACAAATTCTATTAATTATGATCCAGATATTCAACATCTGCCCGTTTTGGCCGTCTCAAAAGAATTCTTTAAAAATGTATTTTCAACTTACCACAAACGTGTTTTAAAATTTGACAGTGCAGCTCGTTGGTTTATCTCTATCCAGCATTACATGTTTTATGTTATTATGGCATTAGCTCGATTCAATTTGTATGCACAAAGCTATATTTATAATATTATTGGGTATGGCTCAAAGACAGAAAAAAGGAAAATCGAACTTCTATCATTGGCTTTCTTCTGGGTTTGGTATGGGTATATGTTGTCGTTTACAAGTTCATGGTCCCATGCAGTTTTCTTCTTGTTTATGTCTCATGCAGTAGCTGGACTGGTTCACGTTCAAATATGTATTAGTCATTTTGCAATGGAAACATATCATGGTATTCCGCAGAGTAGCTTTGAGAAAGATGGCTACATTCGCTCACAACTATTGACAACAATGAATGTAGATTGTTATCCCTTCATGGACTTCTTTCATGGCGGACTTCAATTCCAAATTGAACACCATCTTTTTCCTCATCTCACAAGAAGTAAATTTCGCTATGCTCAAAAGGAACTGAAGAAGTTATGCGAGAAACATAATTTGCCCTACGTAAACAAATCTTTTTATCACGCAAATAAGGATGTGGTAACAAAGTTGTACGAAACGTCGCAAGAACTCAAATTGTCCAGCATGTTTTGGGATGGTATCAATATGATTGGCTAA

Transcript

HSymV2.0_g09.14935_t1

Protein

Uniprot

Uniprot term	Description
Q3EBF7	Delta(8)-fatty-acid desaturase 2 OS=Arabidopsis thaliana OX=3702 GN=SLD2 PE=1 SV=1
Q43469	Delta(8)-fatty-acid desaturase OS=Helianthus annuus OX=4232 GN=sld1 PE=1 SV=1
Q9ZRP7	Delta(8)-fatty-acid desaturase 1 OS=Arabidopsis thaliana OX=3702 GN=SLD1 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00173	Cyt-b5	Cytochrome b5-like Heme/Steroid binding domain	Domain	Interproscan
PF00487	FA_desaturase	Fatty acid desaturase	Domain	Interproscan
PF13897	GOLD_2	Golgi-dynamics membrane-trafficking	Domain	Interproscan
PF00887	ACBP	Acyl CoA binding protein	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012171	Family	Fatty acid desaturase	Interproscan
IPR001199	Domain	Cytochrome b5-like heme/steroid binding domain	Interproscan
IPR000582	Domain	Acyl-CoA-binding protein, ACBP	Interproscan
IPR035984	Homologous_superfamily	Acyl-CoA binding protein superfamily	Interproscan
IPR036400	Homologous_superfamily	Cytochrome b5-like heme/steroid binding domain superfamily	Interproscan
IPR005804	Domain	Fatty acid desaturase domain	Interproscan
IPR036598	Homologous_superfamily	GOLD domain superfamily	Interproscan
IPR014352	Homologous_superfamily	FERM/acyl-CoA-binding protein superfamily	Interproscan
IPR009038	Domain	GOLD domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19353	FATTY ACID DESATURASE 2	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0006629	Biological Process	lipid metabolic process	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0016491	Molecular Function	oxidoreductase activity	Interproscan
GO:0016717	Molecular Function	oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	Interproscan
GO:0000062	Molecular Function	fatty-acyl-CoA binding	Interproscan