Detailed information of HSymV2.0_g09.14958_t1 in Hydractinia symbiolongicarpus

Genomic Location: HiC_scaffold_9:2963182...2973635
NR annotation: XP_047132084.1, endoribonuclease Dicer isoform X2 [Hydra vulgaris]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
A0A974H8H3Endoribonuclease Dicer-L OS=Xenopus laevis OX=8355 GN=dicer1.L PE=2 SV=1
A0A8J1LLF7Endoribonuclease Dicer-S OS=Xenopus laevis OX=8355 GN=dicer1.S PE=3 SV=1
Q25BN1Endoribonuclease Dicer OS=Gallus gallus OX=9031 GN=DICER1 PE=2 SV=3

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00271Helicase_CHelicase conserved C-terminal domainDomainInterproscan
PF00636Ribonuclease_3Ribonuclease III domainFamilyInterproscan
PF20932Dicer_dsRBDDicer, dsRNA-binding domainDomainInterproscan
PF03368Dicer_dimerDicer dimerisation domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR027417Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR014720DomainDouble-stranded RNA-binding domainInterproscan
IPR001650DomainHelicase, C-terminal domain-likeInterproscan
IPR000999DomainRibonuclease III domainInterproscan
IPR005034DomainDicer dimerisation domainInterproscan
IPR038248Homologous_superfamilyDicer dimerisation domain superfamilyInterproscan
IPR044441DomainDicer, double-stranded RNA-binding domainInterproscan
IPR036389Homologous_superfamilyRibonuclease III, endonuclease domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR14950DICER-RELATEDInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0004525Molecular Functionribonuclease III activityInterproscan
GO:0004530Molecular Functiondeoxyribonuclease I activityInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0006309Biological Processapoptotic DNA fragmentationInterproscan
GO:0016442Cellular ComponentRISC complexInterproscan
GO:0030422Biological ProcesssiRNA processingInterproscan
GO:0031054Biological Processpre-miRNA processingInterproscan
GO:0090501Biological Processobsolete RNA phosphodiester bond hydrolysisInterproscan
GO:0006396Biological ProcessRNA processingInterproscan
GO:0016891Molecular FunctionRNA endonuclease activity, producing 5'-phosphomonoestersInterproscan

TOP