Gene detail

Detailed information of HSymV2.0_g09.15097_t1 in Hydractinia symbiolongicarpus

Genomic Location: HiC_scaffold_9:4693636...4709404
NR annotation: XP_047131989.1, protein Smaug homolog 1 isoform X2 [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

HSymV2.0_g09.15097_t1

GTTTCAGCTAATAAAAAATGATAAAAATGAAGTAATTCCTCTCTGGTAGATGTGAATGAATTCAATGCACTAATTGACAGAATGTTGCCTGATCATCCTCATAATCTTCACACGCGCAATGAAGTGATGAAACCTGCTTATATTTTTCGTGATCGAATCAATACTGTAGTCCAGTGGTTTGATCAATGGAACGACATCGAGCAAACGATAGCTTGCTATTCTTTACTCAAAAGATTAGGATCTACCCAAGCACGTTTCTTGTCGCTTGTGCTGGAACACACATTTCGAGATAGTGCTTATGAGGTTGGCATTTTTGAAGAAGAAGCCAATGCCAAAGAATTTCTTCGAGGGTTATGTCATGAAAGTAAAGAAGTCGCAGTTCAACAGCTTCTTCTTCATCTTCCACTGTTGCATCCTGGGAATGACGAAGCTCGCCATGAGTACTTGAAGTTGCTACCGAAGATTTTATCGCATTCGTTAGAATATTCCATACACGAAGAGGAGTGCAAGCAGCTGTTGTCGCTGGCGTTAGTTCACCCTGCATTTGTACCTGAAGAACGTAACTCCCTGACATGGTGGCTTGGCCTGCTTGAAGATAAAGGTGAAAAGATGAGACCACCGCCCGGCTTTAATGCATCAGCGATGAATGCTCACTCGCCACTACACGAGACGAAATCAGCTTATGAATTGGGATGGGGAAACAGCAAAACTAGCCATCGACACCAACCCATCACTAACACTTATTCTTATAAATCGCCATCACTTCTCAACGGATGGAAGGGACAACTTGCACAGAGGGACTCTGGAATCTGCACCTCCTTTGACAACGGTTCTAACGCATTAGAATTTCCTGCTAGTAAAGGTGCACGCCACGAAAGCGATATTTTAGAGGAATTAGGACCACGTGCAATTCGGTCCAGATCTTTTCCTGCCGACCCTGAACGTCACATGCCAGTTTCACCCCAGTCCTCCATAGATAGCGACGAAGAAAATGCATTGCGAAAGATGAACAGCATGACAAACCCCAATGCAAATCCTGGAATGAAAGATGTTCCTATGTGGCTTAAAAGCTTGCGTCTTCATAAGTACTCTCACATTTTCAACGATTTGACATACGAGGAAATGCTGGAACTGAACGATGAATACTTGGAACAGAAAGGAGTGACGAAAGGCGCGCGCAATAAAATTGTGTTGTGTGTACAAAAAATCAAGGAAAGAAAGAGCACACTTTTACAACTTGAAAAGGAGGTCTTACAACCAGGGCGACTCCCGTTTGTTTTACAAGAACTAAAAACTATACTTATGAGCCCCATACGGCCGCCAAAAAGTTCCGAACTTAAAGAAATCGAAGAAGGTAAAGACCCATCTGCGGaggagaaccaaaaagagaacgacagcgaagaagaagacgaggaagaagaCCTTCCGTCAGAAATTTGTCGTGTCATGGGTAAAGCATGCACGCAGATCTTGGTCGTGGCACAGCCAGACGAGGAGTGTTGTCTCACTTACCTCGGTTTATTAGACCGCGTGTTGTCTCATGAAGCTTTTTCGCAAGGCGATAAAAGAAGGCTGCAATCGTGGAAAGCGCAATGTCAAAAATTGGCCAGACAATTAGCTACAAATAGAAAACTTGCCGGAATCGAAAAAGGACCTAAAAATTGGTATGATCCATTTGGTAATGGTACAGCCCTGGGTCGTCGACGTTCTACAAACCGCACGAGTTCTTTAAAGGGCGGCTCAATGATGCATATACCTGGCCCAAGAGCAGGTCCTCTAGTGGCAACCCAAAGCTTGCATAAGAAGTTAAGCTCGACAAATAGTTACCATAACAACATGATGAAGGGAGGACATCAGTCGCTTAGTCGTGCCAAATCTGCTCCAATCCGTTCGAATGTTGTGTTACAACCACCACAGTTAGctcaacaagatccGGAAGGTCTTGATAAACGTCTGCAAACACTGTGTGTGAGCATGACCAACCATGCATTGGACGATTTGTAAAAGTCCAATCTGAAGTGTCAATACATCGGAATAGTCATTAGTTTTACGTAGGCTGGAGCCTCGTTGTTGTCCGGAACGACATCAAGTGTAATAAATAATTAATTACAATCAAGTCGATGCCAGGTGCAGCGTCATTCTTTATATCCAGTGAAATGATTTGCTACATTTATTCAAAGAATTCGTTCTTCATAAGTTTTCACGTTTTTTTAACCAAAAGGACATTTGTTATGTTGTATTAACAGACAGAGCGTTTACTGCTCTCCGTCGTAGAGTATATTACGCTTTCTTAGCAGTTTTATTTTCCAAGGAAAAGTGTTCAAATTATTCCGCGTCATTATATTTGTAATGCTTTATATCGTATGTATTTTTTGAGCTGCCTGCTCAGTTCTCTGTCTATTTATACGGTAAACGAGCTTAAATCTGTTTATTTGGACTTTTGCAA

Protein

Uniprot

Uniprot term	Description
Q5FWP2	Protein Smaug homolog 1 OS=Xenopus laevis OX=8355 GN=samd4a PE=2 SV=1
Q0IHW3	Protein Smaug homolog 1 OS=Xenopus tropicalis OX=8364 GN=samd4a PE=2 SV=1
Q8CBY1	Protein Smaug homolog 1 OS=Mus musculus OX=10090 GN=Samd4a PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00536	SAM_1	SAM domain (Sterile alpha motif)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR037634	Domain	Protein Smaug, SAM domain	Interproscan
IPR050897	Family	SMAUG/VTS1 RNA-binding	Interproscan
IPR001660	Domain	Sterile alpha motif domain	Interproscan
IPR013761	Homologous_superfamily	Sterile alpha motif/pointed domain superfamily	Interproscan
IPR037093	Homologous_superfamily	Smaug, PHAT domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12515	STERILE ALPHA MOTIF DOMAIN CONTAINING PROTEIN 4-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0017148	Biological Process	negative regulation of translation	Interproscan
GO:0030371	Molecular Function	translation repressor activity	Interproscan
GO:0043488	Biological Process	regulation of mRNA stability	Interproscan
GO:0000289	Biological Process	nuclear-transcribed mRNA poly(A) tail shortening	Interproscan
GO:0000932	Cellular Component	P-body	Interproscan
GO:0003729	Molecular Function	mRNA binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K27396	SMG; protein Smaug	-	Messenger RNA biogenesis	ko03019	deepkoala