Gene detail

Detailed information of HSymV2.0_g09.15167_t1 in Hydractinia symbiolongicarpus

Genomic Location: HiC_scaffold_9:5588842...5590650
NR annotation: XP_004208605.2, visual system homeobox 2-like [Hydra vulgaris]

Gene Structure

Sequence

Uniprot

Gene family

Uniprot term	Description
P41935	Homeobox protein ceh-10 OS=Caenorhabditis elegans OX=6239 GN=ceh-10 PE=1 SV=1
Q90277	Visual system homeobox 1 OS=Carassius auratus OX=7957 GN=vsx1 PE=1 SV=1
O42250	Visual system homeobox 1 OS=Danio rerio OX=7955 GN=vsx1 PE=1 SV=2

Gene family	Subfamily
Transcription Factors Family	Homeobox

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00046	Homeodomain	Homeodomain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001356	Domain	Homeobox domain	Interproscan
IPR009057	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR023339	Domain	CVC domain	Interproscan
IPR017970	Conserved_site	Homeobox, conserved site	Interproscan
IPR052294	Family	Visual system homeobox transcriptional regulators	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46892	VISUAL SYSTEM HOMEOBOX 2	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:1990837	Molecular Function	sequence-specific double-stranded DNA binding	Interproscan