Gene detail

Detailed information of HSymV2.0_g09.15196_t1 in Hydractinia symbiolongicarpus

Genomic Location: HiC_scaffold_9:6012780...6037136
NR annotation: XP_047132219.1, RNA polymerase II-associated protein 1 isoform X2 [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

HSymV2.0_g09.15196_t1

ATGATAAAAAGACCTTCACCAAATGAAAATGAAGAGGATATATTAAAATTTCAAGAAGAATACTTTACCTCTCAAGAAAAACCTTCGGTTACCATTCATTCTAAAGTAAATTCATCATCAAAAAAGTATCAAACTCAACAAGATGACACTAAAAATCGAGATGTAGTGGATTTAGGAGAAGTGAAACAAACTACAAAGGTAGATACACATATAAGAGAAGGAAGGAGATTTATGTTGAATGAGAAGGATTTTGATGCTGCCCAATCTTTGCATGAAAAAGATAAAGACCATATTGTTGATGTTTTAACACAAATCCAGGAACATGAGGTAAAAAAGCCTTACAATTTCTCGGCCGGTTACTATAAAACAGGATTTCCGCTAGCACCAAAGTTAAATAGAGATCAATTGAGTTGTGAAAGAAGAACTTATGATGGTTCTTCTAAGAAGAAATCTCTTTTTGCACAGCAATTCAATACTTTCAAAAGACAAGAAAAGTTAGGAAAAAAACAAAGCGAACCTGCAGCATCGTCATCAGCCGATTATTCTCCTAATATTAGCAGTAAAGAAAACCATTCTTCTATTGTTAATGTTGACATAAAAAAGGACCCAATGTATGAAACGATACATGAAGAAAATATACAGAGGTTAAAAGAAATGGGTGAACAGAAAATTTTAGAAGAAAAAGCTAATTTAGCTTCTTCTCTGGATCCAAAGCTGTTGTCATTTCTACGTAAGAGAGCTGAAGAAAAGCAGAATAATATTAAAATAAACAACACAGACTCTGCAAAAGCATCAGACACTGAAGAAAATAAAGATGTGGGTAAAAGAAATGCTGATTCAGAGCCAACACATCAAAATGGTGATGTTAAGTCACTTGAAGTTGACCCCTATGTTGAATTCAACATAAAAAAAGATTATGTGCATATGTCTGATGTGGAAAAAGAAAAATTAGCTTGGATGACAAAAATTCCCTCTGTTAAATTAAAAGAGGACAGTGTAATACCTAGGTTTGATTTTGATGGAAATCTCCTGATCATTGAACCATCTTCTATCGAGACAGAATATCCCATATCCAGTGGTCTTTATCACCACGGCGATGATCCTCAACTTCCAGGTTATACCTTACAAGAACTGTATCATATGGTTAGATCCAATTTTCAATCACAACGGATACTAGCTCTTCAAATGCTGGGAAGAATAATAAAAAATTATCATCAACAAACATACCATGGCAAACTGACAGAAGATTTATTAAACCAATGTCTTAATGCTGGTTTGATATTTATTCTGCGATGGTCACTTGATGAGCAAGCTGAGCAAATATATAGTGCCGCCGTGGCTGTTTTGGCAAATGTTGTTTATGTTAAAAGTGACATGGATATGATTGAAAATGTTATGTATGCCGAGGAAGGATACAAGATTCCTAGCTTATGTACATTTTATAAGAAGAAAAGGGAAGAAATGACGCAAGAGGAAAAAGAGCAAGACCGTGACTTAACAGATGCTGAAATAATGCAAGCAGATGTTGTTAAGGGCCTAATCCAAATTCAAACCCTTCCACGCCTACGTTACATCATGGAAGTTCGCGAACCATCTGACAATTGCATCAAGAATTGCTTGTTTGTGTTGACCAGGATTGTCCTGCACAATAAAGAAACTGCTTATGAAGTATTCAAGTGTTCAAGGCTGATCGAAGTCATCTTTAAAATACTTAGCAATAGCAGCACAATATCGAGCAAACAAACTTACAAAGTACATGCTTTGCGTTTTCTAAAATTTATTTGCATTGCTGGAAAACACATGGCGGCTACCTtgCTCTCCACTTATAAACTTGAGGATGTTTTGTCATCAACATTTTCTTTAAGTGATAACCTCACTAACAAGTCAACAGTTGAAAGTTTTGTACAAACTTGCCAAGTGTGGAGAATATTGTTGCTGCATGGATTATCAACAAATTTAGCAAAGAATTTGTACCCAATCATCATAAATCATTTGCAGCAAATATCGATAAACTTCAAAAGGTTTGATGATAAATCTGTGGCTAGTTTGATTACTGTCATTGACGCAATATTCTGCAGTGCTATAGATGGTTGCTTTGACATGACGATTATTGATGGTTTGTTTGAATTGATTTTGCATTGCGTTAAAACTGTGCAGAAGGATTTATTCGAATATAAAAAGGTGACATATCCTTTCTTTCTATCTTCATTGCTGGTGTGTTGTTCATCTTATTATTCTGCTAAAAATAACATGGTATTACAAGTCAACCCAATTTTACTGCTGGACGAAGTTGAAAACTTTTGGACTTCCCACATGCAACCAATCCTAAAGTCTCCATTTCTTAACATACTCTTTGATGAATTAAGAGTGTATTCAGATTTCAAAACAATGAAGAAGAGAGATGTTTTGCATCACCCTCCTCCAGACTGTCTTCCCACATTTGGCACTAGCTATCTACTTGCTTCTGGAGGTTTCACTTTTGAACCAACCATTATATTGATGCAAGCAATTCTAAAATTGAGTTTGCAGCTGATAAATATAAATAAAAATCTAATTTCCCAAGCAGCCAGCATTCTTACATCAGCAGGAAGTGTTGCGTTCATCACTTTCATTCAAAGCTCTTCACATGTAAAGCGAAGTGACATTCTACTAACGACACGTATGGAGTTGTTGATCATTTCGCATATGTTAGAGATATTTCAACTTGTGGGTGAAAAATTAGGATATGCGATGTTCGGTAGTGCAGTTGTGGAATCCTTCCAACAAGTTGCATTCTGTTTGCTGTCTTGGCTACAACCTGGTGATGAGCAGCATGTCGTGACATTGTATCAGAAGATTATATTTAACTCTAAGATTTTCAAGAAGCAGAATTATATACTTTGGGTTGCTGAACATTGTGACAACAATGTGGAAGAAATAATGAAGCAGCAGCTTTCTGTTTCCAGAAACAATCTAAAGCACATTGGTAGCATGTATGAGACAGTCCTGCTGAGAGCTGAGAGATTTCAAAAGAAGGGATTGACTTCGTATATGACAGCATCAAGGACGGAACAGCTTATACCAACCGATTGGATGTTTCTTCCCATTGTTCAGCTGTACAATTCTTCAATGAAACTTGAATCTTCTGGTGGAATAATTTCAACGGCTAGTGAAGCATCTATTGCTACTTCGAAACGTTGTCTACAGTTTATCTTGCTGTTGGAAGTGACGAAGTCATCTGTACTTGCGAACATTGACGAGACTTTGAGATTGACAAGATTATTGTGTTTATTTTTAACAGAGGGATGTTTGTTCAACGAGGGAGAGTTAAAAGATGTATTGTTATGCTTGTTGGTGACATATTCTTCTCCATCATTTCAATCATACTTGAACTTCGAAACAACAATTCCTGGTGTCACCTCTTTCTACGACATATACTGTTCTTTGCTCGACCAGTATCTTTCTTCTTCATTTGGTGATTATACCTTTGCGAACTTCATCTTATTTCCGATACAACTGCGGCATGATGTTAAATTTCGAAGAGCTGTATGGACGGAATATTGCGAAGTTCTAAGACAATTTCCAATACCGTTAACGCAGGTTACATGTGACATCAAAAGATTTCTTGCAGCAGAAGAAGAGAATTTTGAAATGGTCAGGTTGTACTTTAAGGCGCTTATTACAAAGAAAGTCAGGCCCACATGGTGCCCTGTTTTTTATCTGATTGCTGTCCATCATGTGAACCAGTTCATATTTGGTGACGAGAGAAAGAATATGGATGGCAAAACTGACCAAAGTGGAGACATTGAAAAAGCTAGAACGGATTTCTTAGACGAAATACTAACCTTAAATAACCAGGAATGTAAAGACGATGTGATAACTTATCAATGTTTTGACTTCAACTCACCAAGAGGTATATCAAAGTTTACCCATCTTCCGCCATCAAGAGAATTATTGTTACGGGAGCGCGGCGTCTCGATGTCACAGCGGTAA

Transcript

HSymV2.0_g09.15196_t1

Protein

Uniprot

Uniprot term	Description
A0JN53	RNA polymerase II-associated protein 1 OS=Bos taurus OX=9913 GN=RPAP1 PE=2 SV=1
Q9BWH6	RNA polymerase II-associated protein 1 OS=Homo sapiens OX=9606 GN=RPAP1 PE=1 SV=3
Q3T1I9	RNA polymerase II-associated protein 1 OS=Rattus norvegicus OX=10116 GN=Rpap1 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08620	RPAP1_C	RPAP1-like, C-terminal	Family	Interproscan
PF08621	RPAP1_N	RPAP1-like, N-terminal	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013929	Domain	RNA polymerase II-associated protein 1, C-terminal	Interproscan
IPR016024	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR011989	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR039913	Family	RNA polymerase II-associated protein RPAP1/Rba50	Interproscan
IPR013930	Domain	RNA polymerase II-associated protein 1, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21483	RNA POLYMERASE II-ASSOCIATED PROTEIN 1	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0006366	Biological Process	transcription by RNA polymerase II	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K20826	RPAP1; RNA polymerase II-associated protein 1	-	Transcription machinery	ko03021	deepkoala