Gene detail

Detailed information of HSymV2.0_g09.16538_t1 in Hydractinia symbiolongicarpus

Genomic Location: HiC_scaffold_9:14345552...14349908
NR annotation: PYV19351.1, RNA-binding protein [Acidobacteriota bacterium]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

HSymV2.0_g09.16538_t1

TCACATGGTCTTGTGTCTTCTGTTCTCTCAGTCGTCCCGTGCCGTTGTCTTTCTTTTTGAATACAAAAGTTCAAGTCTAGCGAGGACAGTCATTAAAATGGGTGACAGATACACAGGAACCAGTGTGTATGTTGGAGCATTAAGTCCTTATACAAATGAAGATGACTTATACAATTTGTTTAAACCATTTGGCAACATTAGTAACGTTGCTGTTATAACTGACAGGGAAACTGGTGAACCTAAAGGATTTGCTTTTGTAAACTTTGAAAATGAACAAGATGCACAAGATGCTGTGGCTGGTGCCAATGGTGAGGAAATCAGAGGAAATCAAATAACTGTGGAGATTTCTAAACCAAAACGATTTAGCTCCAGAGGAGGTGGTGGTGACCGTGGATTTAGAGGAAGTCGTGGCTATCGAGGTGGTGGTGGAGATCGTTATGGTGGTGGTGGTGACAGATATGGTGGTGGTAGAGAAAGGTATAATAATGATGGTGGTGATCGTTATGGTGGTGGTGGCAGAGGCGATCGTTATGGTGGAGGGGGAGATCGTTATGGTGGAGGAGGAGATCGTTATGGTGGTGGAAGTGATCGCTATAGTGGTGGTGATCGTTATGGTGGTGGTGGTGATAGGTATAGCAGCAGAGGTGATCGTTATGGTAGTAGTAGTGACAGGCATGGTGGTGGTGGTGGTAGGGATAGATACAATGAAGGCAGTGACAGATATGGTGGTGGGGACAGATATGGTGGTGAAGGTGAACGGTATAGTGGCGGGGGAGGTGATCGGTATGGTGGAGGCAGTGATCGTTTTGGAGGTGGAAGAGGTAGAGGTTATGGTGGCAGAGGAGGTTCACGAGGTGGACGTGGAAACTTTGGAAGCAGATATTAAAGGATACAACCTGTTAACAGCTGCCAGTGATAAAAGATTGTGTAAATAATATGCATTCAGCAATACAACAGATCAAAACGTATCACGCAAAATGCAGATGACATGTCAATCAGTTAATGGAAAACGGAATAAACAATACGGACTCTCTTTTATCATGTTATGCTCTTGATTAAATTGTATGAGTGGGCTCAAGTCAGTTTTATATAATACATGTAAATATTCTTAAAAGTTATTGTTATCCTACCATTCCATTGCACTGCAATTTACTGAAAATTCTGTGATGAATGATTTAATACAACTTGCAAACCCAGACGTAATGTTACCAATGTCAGAGTGCTATATATTGCAATCGCAAAGTATATTACAATCATGTAAGTTTGATAGTGTGTTGCATGTTTTTATTGAGCTAATAATTAAATCAGTTACATACATGCCAATCTCTTTCACTTTACTACAATAATAACACCAGTTGTCAATCAAAGTGGATGTACGCCAAGAAAACTAACTATATTGACACACCGAAGCAATCTCACATTGACGCAAATCAGCATTAGGATCAATTTCAAAAGTTCAAGGTTATGTAGCAAACGCACATCACACGGTATTGTTCCTTTTTACACAGTCCTCATTTATATTGACACAGATTGCATGCATTTGTAGAAAGTCAACATGATTTGAAAAACTAAAAGTGGTGTTATTTTTCAAATTTTTACCTTTTTGTGCATCCAGTTCATTATAAATTGAACTGCTCTGATGTATCAATGATGTAACAAGTTAAAAAACAACCAACAAAAAATTGGATTTAACCACAAAACAAATGTCAACTTACACCAACTTTTTTGTGTTCATTCTATTATTGATTTTTGCAAAAATACACTATTCAGTATATTATCAACACACAAATTAATATATATATTTCAAGTTAGTCATCAATCTTTACTATGTCAACAATGTTTTCCAAATTATCAATTCTGCATTTCAACGGCCCAAAATGAGTAATATGTATTTTGTTTGAAACAGAGAATTGTTCATGAGATCTGTATCAGTTGGTGTAACAATTCTTTAGATTTTTCAACGGTTACTTTGATTCTACTTTCTACTTCTTTTTTTTTAGGGAAAACTGCAAGTGTTAACGAAGACAATGCTCTGCATCATTTAAAATAAGGATGTTATACAAAGAGTATTTCTCAACAACACGAATTATGGTCAGGTTTACCACACCCAGCAAAAAAGTAGTATATTTTTTATTCTTGGCAACTCAAATTAGGCAAAATCTGCGTTTTGTGTTGTTTTTGCTTTATTTTTAGAACATTTGGTGGTTTGTTGAAAAGCAGTAAATAGAAGACCGGGTCTAGGCTGCTTGTGATATTGATTGTGGCACCATCATGAGGAAATGTAAAATTTAAAGGGTGGCCATATATAAAGTAAGGCTTGGCATTGTTAGATGCGATAGAATCTGCACGTTCACGTGAGGACAAAGCTGGAGCTCAATTCCGGGGTCGATATCCGTGTGAGTTGAGATGTACTTATACTGATCGATGTGTTAATGAGAAAACAACATTAA

Protein

Uniprot

Uniprot term	Description
P39697	Small ribosomal subunit protein uS19m OS=Arabidopsis thaliana OX=3702 GN=RPS19 PE=1 SV=2
A0A0D1C8Z4	Glycine-rich RNA-binding protein 1 OS=Mycosarcoma maydis OX=5270 GN=GRP1 PE=1 SV=1
Q44560	Putative RNA-binding protein RbpA OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576) OX=103690 GN=rbpA PE=3 SV=3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR051106	Family	RNA-binding and splicing regulatory protein	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48028	GLYCINE-RICH RNA-BINDING PROTEIN RZ1A	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan