Gene detail

Detailed information of HSymV2.0_g09.16540_t1 in Hydractinia symbiolongicarpus

Genomic Location: HiC_scaffold_9:14354159...14367658
NR annotation: XP_047133185.1, protrudin isoform X1 [Hydra vulgaris]

Gene Structure

Sequence

Uniprot

Uniprot term	Description
Q5ZL36	Protrudin OS=Gallus gallus OX=9031 GN=ZFYVE27 PE=2 SV=1
Q6P7B7	Protrudin OS=Rattus norvegicus OX=10116 GN=Zfyve27 PE=1 SV=2
Q5T4F4	Protrudin OS=Homo sapiens OX=9606 GN=ZFYVE27 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan
PF01363	FYVE	FYVE zinc finger	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR017455	Domain	Zinc finger, FYVE-related	Interproscan
IPR000306	Domain	FYVE zinc finger	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR042405	Family	Protrudin	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR011011	Homologous_superfamily	Zinc finger, FYVE/PHD-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14543	PROTRUDIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0046872	Molecular Function	metal ion binding	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0016192	Biological Process	vesicle-mediated transport	Interproscan
GO:0043621	Molecular Function	obsolete protein self-association	Interproscan
GO:0071782	Cellular Component	endoplasmic reticulum tubular network	Interproscan
GO:0071787	Biological Process	endoplasmic reticulum tubular network formation	Interproscan
GO:0072659	Biological Process	protein localization to plasma membrane	Interproscan