Gene detail

Detailed information of HSymV2.0_g09.17393_t1 in Hydractinia symbiolongicarpus

Genomic Location: HiC_scaffold_9:26976030...26980542
NR annotation: XP_004206570.2, delta(14)-sterol reductase LBR isoform X1 [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

HSymV2.0_g09.17393_t1

TTTTAGTAAAGTGAAAGTTGACGCTCTAAATATGGAGAAAATAACCAAAAGAAAGCCAATAAAATTGAAGACAAATAATTCACAAGAAAAAGACAATGAAGTTGAAGACAAGCCTATATCGAAACTTTTTATGATTGCTAAATTTTGTGTCTCGCTGCCACTAAATCTAGTGTCAGTCTCATTTCCAGTGATCTTCATTTGTGGTTTGCATTTCTCATGTATGTCGAAAAATGCCTGTACTTTTTTAAAAATGCCTCAATTTCCAGAATTTAGCAAATTCTTCTCCTGGAAATCTGTTGGCTATGTAACTGGCTGGTTTACATTCCAAGCTATACTGTCCATGTTACCAATTGGAAAGCTTGTTGCTGGCCCTCGCCTTGATGATCAAAAGAAATTGCATTATAGATTGAATGGTATGGCGTTATTTAACATGTGCCGGTAaggtaaaggcaatttaattagttctataggtagcagagtttgtttttcttgggtcactcgattgacaaaataaaattaattgtgaagaatttttcttagtgtgcgatcttaaaaattaaaaactaacagagcttaatgatgctcttttggcatggggaaaaacataatgaagttatagccatatttatgactgggaaatttcaacccatacacaaaaatgctgtaacaaaagtttaatttaacttcatatctaTCGACACTACAATAGTTACACTTTTTCAGGAAATCATAATCGAACAATTGGAAAAAAGATTTAATGTAAGTCAAGAATGGATGAAGATTTAAATAAAAGGACCATTTGAAAAAAATTGTGTATTATAATTTATAGTTTTTTACAAAAAAATGCAGACAATTAGGCGgaacaactaattaaattgccttcgtctGACAATAATATTCCCTGAAGTCGATATATATAAAAACAAAGTCTACAAATCTGTTAATGTACAAAAAGCGAAAGGATATTCTTCAGACACAAAAATGCAATGatcttatcataacatatgatttgatatcttgtcttttctaggactatcatctcTCATTTTTACGATGGCAATATTTGTGTACACAACTTACTTTCGTAAAATTCCTGAAAACTACTATAAAGACAATTATATAAGCTTTATAACAGGTTCATTTATTTACATATTACTAATATCTCTTGTGGTCTTGGTTCATTCTCGTTATACTGGCTCTACTAAATATGGCAACTCCAGTGGCAGGTTGATAGAAGATTTTATATATGGATGTACAGTGAATGCAAGACTCTTCGATGGAATTTTGGACTTAAAAGTTTTTGCCTTTAAAGCTGGTTTCATTTCTTGGGCAGTTATAAATATTGGATACCTCTTGGAAGCAGTCGAGACATCAGGATTGATGGGTACCTTAGATAAAAATCCATCTTTATTGATTCTTGTTGTCTTGCAACTTTGGTATGTATTAGATGCTATGATATTCGAGGAAGCATTGCTGTACACAGCTTCGTTGTCTTCAGAAAAAATTGGTTACATGTTTTACTACTCGGTGTTGTGTTTCTTTCCATTCTTCTGCTCCTTGCAGGCTAAGTACCTGTTTTTATTTCCTCGATCGCTTTCTTGGCAGTACTACATAGTGGCAGTTTTTTTGTATGTAATTGGTTATTGTATTTATCGAACATCAGTTCAACAAAAGTTTAACTTCAGAAAGGATCCACATCAAGCAAAAGTTTCTGGTGTTAAATTTATCCTTACTGCAAACCAAAAGGACATTTTAGTTGATGGATGGTGGAGTGTTGTGCGACATCCGAATTATCTCGGTGATTGGATGATGTGTTGTTCTTGGGGTATTTTATGTGGATTCACCCATGGTATACCGTGGTTATGGCCAGTGAGCTTACTTGGAATGCTGATTGGCATGGCAATACGTGACGATGCTAAATGTAAACAGAAGTACGGTTCAAGTTGGGAAGAATACAGAAAACTTGTGAAACACAAAATGTTGCCCTATATATTTTAAACTGTGTTGCATAGATCACAAGTAACAATTTTATCAAACGTATGCTTTTATATGCTTATTTCTTATGGTAATTTGTAAGTTTATGTTTTCTATTCGCGATTCTTATGTTTTTATGTGGTATAGAATATTTTTAGGTATTTACATCTGGTGCGTGTGAACATGCAAAT

Protein

Uniprot

Uniprot term	Description
Q71KT5	Delta(14)-sterol reductase TM7SF2 OS=Mus musculus OX=10090 GN=Tm7sf2 PE=1 SV=2
A0A1D8PIC7	Delta(14)-sterol reductase ERG24 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) OX=237561 GN=ERG24 PE=3 SV=1
I1RR90	Delta(14)-sterol reductase ERG24A OS=Gibberella zeae (strain ATCC MYA-4620 / CBS 123657 / FGSC 9075 / NRRL 31084 / PH-1) OX=229533 GN=ERG24A PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01222	ERG4_ERG24	Ergosterol biosynthesis ERG4/ERG24 family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001171	Family	Sterol biosynthesis ERG24/DHCR-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21257	DELTA(14)-STEROL REDUCTASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0016020	Cellular Component	membrane	Interproscan
GO:0016126	Biological Process	sterol biosynthetic process	Interproscan
GO:0016628	Molecular Function	oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	Interproscan
GO:0005637	Cellular Component	nuclear inner membrane	Interproscan
GO:0006695	Biological Process	cholesterol biosynthetic process	Interproscan
GO:0016627	Molecular Function	oxidoreductase activity, acting on the CH-CH group of donors	Interproscan
GO:0030176	Cellular Component	obsolete integral component of endoplasmic reticulum membrane	Interproscan
GO:0050613	Molecular Function	delta14-sterol reductase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K00213	DHCR7; 7-dehydrocholesterol reductase	EC:1.3.1.21	Steroid biosynthesis	ko00100	deepkoala