Gene detail

Detailed information of HSymV2.0_g10.17967_t1 in Hydractinia symbiolongicarpus

Genomic Location: HiC_scaffold_10:9183859...9191272
NR annotation: CAH2311779.1, LIM homeobox transcription factor 1-alpha [Pelobates cultripes]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Uniprot term	Description
Q60564	LIM homeobox transcription factor 1-beta (Fragment) OS=Mesocricetus auratus OX=10036 GN=LMX1B PE=2 SV=1
O88609	LIM homeobox transcription factor 1-beta OS=Mus musculus OX=10090 GN=Lmx1b PE=1 SV=3
O60663	LIM homeobox transcription factor 1-beta OS=Homo sapiens OX=9606 GN=LMX1B PE=1 SV=3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00412	LIM	LIM domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001781	Domain	Zinc finger, LIM-type	Interproscan
IPR050453	Family	LIM/homeobox transcription factors	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24208	LIM/HOMEOBOX PROTEIN LHX	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000977	Molecular Function	RNA polymerase II transcription regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0030182	Biological Process	neuron differentiation	Interproscan