Detailed information of HSymV2.0_g10.17994_t1 in Hydractinia symbiolongicarpus

Genomic Location: HiC_scaffold_10:9617562...9630547
NR annotation: XP_012554183.2, probable U3 small nucleolar RNA-associated protein 7 isoform X2 [Hydra vulgaris]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
Q9P4X3Probable U3 small nucleolar RNA-associated protein 7 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=utp7 PE=3 SV=1
Q9Z0H1WD repeat-containing protein 46 OS=Mus musculus OX=10090 GN=Wdr46 PE=2 SV=1
O15213WD repeat-containing protein 46 OS=Homo sapiens OX=9606 GN=WDR46 PE=1 SV=3
Gene familySubfamily
Transcription Factors FamilyETS

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF08149BING4CTBING4CT (NUC141) domainDomainInterproscan
PF00178EtsEts-domainDomainInterproscan
PF00400WD40WD domain, G-beta repeatRepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR012952DomainBING4, C-terminal domainInterproscan
IPR036390Homologous_superfamilyWinged helix DNA-binding domain superfamilyInterproscan
IPR015943Homologous_superfamilyWD40/YVTN repeat-like-containing domain superfamilyInterproscan
IPR019775Conserved_siteWD40 repeat, conserved siteInterproscan
IPR036388Homologous_superfamilyWinged helix-like DNA-binding domain superfamilyInterproscan
IPR000418DomainEts domainInterproscan
IPR001680RepeatWD40 repeatInterproscan
IPR040315FamilyWD repeat-containing protein WDR46/Utp7Interproscan
IPR036322Homologous_superfamilyWD40-repeat-containing domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR14085WD-REPEAT PROTEIN BING4Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0003700Molecular FunctionDNA-binding transcription factor activityInterproscan
GO:0006355Biological Processregulation of DNA-templated transcriptionInterproscan
GO:0043565Molecular Functionsequence-specific DNA bindingInterproscan
GO:0000462Biological Processmaturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)Interproscan
GO:0005730Cellular ComponentnucleolusInterproscan
GO:0030686Cellular Component90S preribosomeInterproscan
GO:0032040Cellular Componentsmall-subunit processomeInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K14768UTP7, WDR46; U3 small nucleolar RNA-associated protein 7-Ribosome biogenesisko03009deepkoala

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