Gene detail

Detailed information of HSymV2.0_g10.18469_t1 in Hydractinia symbiolongicarpus

Genomic Location: HiC_scaffold_10:15457645...15469214
NR annotation: MTI66763.1, nopaline dehydrogenase [Bacillota bacterium]

Gene Structure

More details in Jbrowse

Sequence

CDS

HSymV2.0_g10.18469_t1

ATGCCAAAATCATTTTTACTACGACGTAAGAGGGAAGAAAATGTTTCATCGAACATTGTAGTTGCAGAAATTTCTCAGAATGGAGGCAAGCAATCGACAGATCAGTCGATAAAAATGGCTGGGAAACGCAAGTTACGCGATAGTGAGAATTCTCCACAAACAATTTCGAGAATTACCGGACTTTCGACGCACGTTCACAATGATTTGCATGCTTACCACAAAAACGCTGAACGTTACAGCAAGTATCTTTGCATAGACAAGCCTGTAAAGAAAGAAAATAGTTTCCATGTTTCTCGATTACTCCAAGAGAACAAAAAAGCACCCAGTATTCATAATACGGATTATTCGGCTTTTAAAGTCTTAAGCAAGTCAAGTCCGCTAAATTATTTCGAACGATTGTATAAGAAACGAATGCGTGAACACAACGAACTTACAATGGAAATTGATAGGTTTAAACCATGTAGTAAGTCATGCTGTGTTCCGTCGCCGTCATCATATCCACGTCACTCACCGACAGTTTCACATCATACGCCAACACGTTTTAGTTACTCGCCAATACTTTCTCGCCGTTCGAGTGAAACAAGTAGTGCAAATTCCAGCGGAAGTACATGCAACTCTCGTCAAAACGAAAGCAATTTGTCGTGTGAAACCGATGAGGAGCACCAAAGAAGTCCCATTTTGCGTATAAAAAACACAATCTGCCATGGACCTTGCTGCGGGCCACGCACTCCAGGAGAAAAATCAATGATAAGAAAGAATATTGATCGACATTTTTTACCTTTTGTTCCATATCGAAAAGTTAAAAAAGAGATAAACGAAGAAAGTTATAACATGAGAAAGTGCTCTTGTCCGCAGTGTTATATTGATACACAATTTGAACACAGGGAACCTCTAAAAGGGATACCATACCTTGCTAAAAAAAATTCTATAGATACACCTGAAAATTTACAAAAATTGGAAATAAAACCTATATCAAAAAGGAAGGCTCTGATTGGCGAGCTAGGACTTCATCAAAATGTTCGTAAGGAAGAAGAAAGAGAAGGTAATAAAGAGGGAAAAGATAAACACGTCAGTTCGACCGATTTGATAAATATACCACCAGGTCCGAATCGCAGTCGCGCTGTTGCTAATTTACTGGAACGACGGAGAGTAGCGGAGTTGAACAGTGCTTTTGGAAAGTTGCGTCTCCTTGTGCCAAGTTACGGCGATGAAGATAGAACGTTATCCAAAATCAAAACTTTAAAATATGCTTTAAACTACATGTACCATCTTACTGATATACTAAACATGCAAGCCAAGGATGACTCTTTTGACGTTAAGACATATTTTGTTTCGCCAGTAGTATTGAAATATTTTAAGTTGTTGAAAGCAACAAAAATGAAAGTATCTGTGCTTGGTTCAGGAAATGGTGGTTATGCTCTGGCTTTTCATTTGGTACAGTTGGGCCATGAAGTTTTGCTTTTTGAATCTGAGGAATTTAAAGATGCCATTCAACCTGTTCAGAATACTGGATGCATTGTCGCTTTAAAGGAGATAGGCGATTCTCAAGCTGTTGTTCATGGCGTGTCGAAAATTTCCATAAGCACAACAGACATTAAGGATGCGATTGGTTTCAGCAATATTGTGATGCTTATTGTTCCATCTTTTGGACAAGGTCCCGTATTTAAATCGGCTTTGCCCTACCTGACAGAAAAACACATACTCATAAGTCTTCCAGGCAATTTCGCCTTCCTTGAATACTTAAAAATCGTTAAAGAGAGATCTGAATTAGATGTAACAAAAGATTTACCATTCACGCTTGTAGAAACCAGCACGATTCCGTATGCATGTCGGAAAGTTAAGGGAAACCAGGTTTTCATTAGCGGCATTAAAGCAATGTTAAATGCAGGAGTTTATCCATGCTCAAAAACGGCTGAAACCATGAAGGCTATCAGTCCGTTGTTTATACTGAACTTACAGACAACAACAAATATATTAGAGGTTGGTTTTTGCAATCTGGCATGCGTTGTACATCCATCCATAACCATTTATAATGCTGGTTGGATCGAATCAAGGGAAGGAGAATTCGGTTTTTACAAAGACGGTGCGTCGCCTGCAGTGTTAAAGTTAGTCACGGCTTTAGATAAAGAACGAATTGCTATAGCGCATGCACTGGGCTTTACTGTGGATAGCCTTTTGACAGGTTGGGCGAAGTGGTACGGAGAAAAGGAAGTAAATACCTTAGAAGAGCTGGTTGGTACCAAACGTTATGAAACAATTAAAGCGCCTTCCAGCTTGAACAGCCGCTATCTAACCGAGGATTTGAACTTCATCCTCCTCCCGATTGTTAACCTTGCGAGACAATATAATGTACCAACTCCAGTGGCTGATGCTGTGGTCACGTCAGCGAAAACATTGACCGGTTTATCCTTCCAATCCGCCCGATGCTTTTCTACTTTCCCAAGACATTTTCAAAATCTTTAA

Transcript

HSymV2.0_g10.18469_t1

Protein

Uniprot

Gene family

Uniprot term	Description
Q44297	Opine dehydrogenase OS=Arthrobacter sp. (strain 1C) OX=79670 GN=odh PE=1 SV=1
P94210	Protein ocs OS=Agrobacterium vitis OX=373 GN=ocs PE=3 SV=1
Q9Z2E5	Transcription factor Atoh7 OS=Mus musculus OX=10090 GN=Atoh7 PE=2 SV=1

Gene family	Subfamily
Transcription Factors Family	bHLH

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01210	NAD_Gly3P_dh_N	NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus	Family	Interproscan
PF00010	HLH	Helix-loop-helix DNA-binding domain	Domain	Interproscan
PF02317	Octopine_DH	NAD/NADP octopine/nopaline dehydrogenase, alpha-helical domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011598	Domain	Myc-type, basic helix-loop-helix (bHLH) domain	Interproscan
IPR011128	Domain	Glycerol-3-phosphate dehydrogenase, NAD-dependent, N-terminal	Interproscan
IPR036638	Homologous_superfamily	Helix-loop-helix DNA-binding domain superfamily	Interproscan
IPR008927	Homologous_superfamily	6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily	Interproscan
IPR051729	Family	Opine/Lysopine Dehydrogenase	Interproscan
IPR036291	Homologous_superfamily	NAD(P)-binding domain superfamily	Interproscan
IPR013328	Homologous_superfamily	6-phosphogluconate dehydrogenase, domain 2	Interproscan
IPR003421	Domain	Opine dehydrogenase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR38015	BLR6086 PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0046983	Molecular Function	protein dimerization activity	Interproscan
GO:0016616	Molecular Function	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	Interproscan
GO:0046168	Biological Process	glycerol-3-phosphate catabolic process	Interproscan
GO:0051287	Molecular Function	NAD binding	Interproscan
GO:0016491	Molecular Function	oxidoreductase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K01733	thrC; threonine synthase	EC:4.2.3.1	Vitamin B6 metabolism	ko00750	deepkoala