Detailed information of HSymV2.0_g11.19601_t1 in Hydractinia symbiolongicarpus

Genomic Location: HiC_scaffold_11:9386019...9395637
NR annotation: XP_047128777.1, nematogalectin isoform X1 [Hydra vulgaris]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01391CollagenCollagen triple helix repeat (20 copies)RepeatInterproscan
PF02140Gal_LectinGalactose binding lectin domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR050149FamilyCollagen superfamilyInterproscan
IPR043159Homologous_superfamilyD-galactoside/L-rhamnose binding SUEL lectin domain superfamilyInterproscan
IPR008160RepeatCollagen triple helix repeatInterproscan
IPR000922DomainD-galactoside/L-rhamnose binding SUEL lectin domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR24023COLLAGEN ALPHAInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005615Cellular Componentextracellular spaceInterproscan
GO:0030020Molecular Functionextracellular matrix structural constituent conferring tensile strengthInterproscan
GO:0030198Biological Processextracellular matrix organizationInterproscan
GO:0031012Cellular Componentextracellular matrixInterproscan
GO:0062023Cellular Componentcollagen-containing extracellular matrixInterproscan
GO:0030246Molecular Functioncarbohydrate bindingInterproscan

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