Gene detail

Detailed information of HSymV2.0_g11.19653_t1 in Hydractinia symbiolongicarpus

Genomic Location: HiC_scaffold_11:9995236...10003515
NR annotation: XP_012560932.1, glycine-rich RNA-binding protein 10 [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

HSymV2.0_g11.19653_t1

CTTTTTGAAGTTTAGACGGCGGCGTCAGGCATTGAACTTACCTTAACATAAAAATGCAAGGTGGTGAAAGAATAAAGCTTTATGTTGGCTCTTTGCCTTTTGATACAAGAGGACCAGACCTCGAGGAAATGTTTTCAAAATATGGAACACCACATAATGCTCATGTGGTGATGGAAAAAGATGATGAGACAAGATCTCGTGGCTTTGGTTTTGTCGAATTCGAAACTTCAGAGGAAGCAGAAGCAGCTATTAATGGATTAAATGAGACTCCACTTGGCCATAGACACATAATGGTTCAGCATGCTGGTAAGCCTGCTAGTGGTAAACCCCCACAAAGAAGAGGTAGAGGAGGTCCTGGTGGGGGCAGAGGTGGTCGTGGTTTTGGTGGTGGGTTTGGTGGACGAGGTGGAAGAGGAGGTGGTTTCGATCGAGGAGGTAGAGGTGGGAGGGGTGGACGTGGTGGGTTTGACCGTGGTGGTAGAGGGCCCAGGGGAGGCAGTGGACGTGGTGGATATGGTGGTAGAGGAGGACGAGGAAGAGGCGGGTACGGAAATGATAGTTATGGCAGTGGAGGTGGTTATAATCAAGGAGGAGGGTATGGTGGAAACAGTGGAAGTAGCTATAACAGTAATGATTATAGTGGAAATTACAGTAGCGGGGGTCAAGGGGGTGGATATGGAGGAAACAGTTATAGTGGTTCTAACCAAGCTGCATCAGGTGGTTATGATAGTGCTCAAACTTCATATGGTGGTGGCCAGAATTCATATGGTGCAAATCAAGGCGGGTATGGTGGCAGTACAGGTGGATATGGAGCATCCCAACAGAGCAACCAGTCAAGCTATGGGGGCAATCAACAAAGTTATGGTAATAGTAACAGTTATGGCGGTGGCTATGGAAGTGGTGGACAAAATTCATATGGTAGCAGTGGCGGTTATGGACAACAAAGCACCAACACTCAAGGTGGAGGTGGCGGGGGTAGAAGTGACTGGTATTGAGCAGGCCTACATTGATCATCTCCTGCCTATCTTAATGAAGTTGAAAGTGACATTGTGGCCTTTATAGAGGTCTTTGTACATATAAATTTATCCACTTCAAGAAGAAAGTTATTCGGACTACATTACGCCTGTAAAGAATGCAATTCGATATGAACTACAAGTTATAATATAAATATGTGGACTTCACGGAACAAGACATATGCCTTTCAAATTGTTTTTATCAAGCTCCTTCAGCAAGAATAACTTAAAGCCTTTCGTAACTACTAGTATATTCCTGCATTTGTTCTATGATGTTACTGCTCTGACAAACTTGCCAAGAGCCACAAGTGGTCTCTGTGTTTCTTTTAAAGATAATTTTTAATTTTTTAATTTTATGTATATTGATGATAACAGTAATCTCAATTTTCTCATTTGTATTCGTTATTTTATTCCAGTCTATGTCTGCTCAATGTTTCAGGAAATGTAAAACTAATTTAAAATTTCTAACTGTATTACTAATTTTATTCTGGTCAATTCCTGTCTGTTGTCCTCAAGGTTTTACATAATTTTGTCCTGAAGATTTGTTAAAAATATCAAATGCAAATAATTAGGAGGGGATAACGAAAATTGATAAAAACACAGTTAAAAGGGATAATGCTTAAGGCAAACAATGGTCTCTTCTAAGAAATTCTGCCTGTTCCTGATAAATATGTTTGCTTGTAAGGGAGGCAGGGAAAAACAGATATTAGGATAAAAGGATTGACCAAATGTGAAAGCAATAAATCATATTTCAATACCTCATCAATAAAGTTGAAGTTACACAGCTACCTGGTTTTTTGGTATTTGCGATTAAAGAGACGACCATCAAGAGTTTAATCAGTTATATAGGCCTAAACCAAAAAGAATATAATCACCTTATATAAGTCTGGACCGACAAGAATTTGATCAGTTTATTAAGACCTGAACCAGCCAGATCTGCTAAAATAGACCAGATAAGCTAATGCTGATCGAATCAGCCTGGACCAACACACACTTTATGCTATAATCATATAGGCCTGGACCACCACGGATTTATGCTTTCCTCAAAAAGGCCTGGACCCGCACAGATTTCTGCTTTGCCTAAATAGGCCTGGAAACATTTGCCATTAAGGTTGGTTACATTCTTTGATTACGAAGGCACACTTGTTTTTTTGCATTTGCACATGAATCTTTTTTAAAAAATCATTGTTAAAGTCAAAGGTATTGGTGTTTTTAAGGAAACTGATTGGGGATGCCAGTCCTTTTTTGATTGTAAATATTGGAAACCCGGAGATTTGCACAAAAGTTGAAAAATAAAAAAACATTTCTTTTTGTGTGTAAATATGTTGAAGATAGAACTGATTTCATAGCGTTAATTATAGGACTTGTGATGCCAATGACTAATTGACAATGATTCATTGTGCTTAAAAGGATTCCAAAGTGATACATGTCGCTGAACTTTGTGGCTGTTCATATACAACTTATTAATTATCAAACCTTCCTGAATATTTTAAGATAAGATATTTTTTCTCAATATATGCGCTTAAGAAAAGCTTACCTACAAAATTTCATTCCAAACAAACATGCAGGGTCAATTAAAAACTGTCCTGGAAGACTGACTACCTCCTTGGCCTATTTTTTTGTCAAAAAAGGCTTAAAACGTTTTTAGCTTTGTCACAGTAGTTCAGCATCACTTTTCACCTTGGAATCTCTTTTGAAAAGCTTTCCTAAGTTGAAGTAAGTGGCAACTTTAATAATGCCGTGTTTTTTGCTGTGCAAATCAAATTTGAAATCTTTAATCTTTGTTGTTATTTATAGATTAGATCACTACGCTTATGACCGATGTGGTTCTATTATAAATCGTCGTTCAAAAATGATGTTATTCGGCAAATTCTGTAAAAAGTTGCTGACTTATATTTTGAGTTCATTCTTGTTACGAATGGCCACTTCCGAAGGTAGGTATGATGCAAGCTTACGGTAAGTATTTCCCAAGAAGAAGAAACTTTCCCGTCAACCACGTTAAAATCTCTTTTAGTTACGAAAACATTGAGTCCTTTGCGTTTAAAAACCTAACGGgtaggtttttatcaaatctcgaatctcctcaattttagttttaaaacctgtgacttgtaacaagttttaaaactaaaaatgaaaaatcaaaacaatgttctaatttcgaaattcctagaactgcatggggcacggtatttcctataaaatctcaatttctttgaaaaattatgatgtcctcattttttttttattattttttttatgtaaaaatcccgtcatctcaaaataggtcaaattcttgtgaaaagtattcacatCCCAAATTTTACACTAAGAGTGGCAACCCTATTAACTTTTCTGTTTAAAAAATCTTCTGTCTGAAATTTAGAACTTCATGTTAATTTGAGATTTCAGAGCCCAGGAAGTGGTCTTGGACGCAGAAAACGCTTTAGTTGATTTTGGAAGCTGGCATCCTCAAGTGTATACAATTAATCCTAATACTACTTTTTTTTCAAGAA

Protein

Uniprot

Uniprot term	Description
A6NFN3	RNA binding protein fox-1 homolog 3 OS=Homo sapiens OX=9606 GN=RBFOX3 PE=1 SV=4
Q8BIF2	RNA binding protein fox-1 homolog 3 OS=Mus musculus OX=10090 GN=Rbfox3 PE=1 SV=2
Q66JB7	RNA binding protein fox-1 homolog 2 OS=Xenopus tropicalis OX=8364 GN=rbfox2 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR050502	Family	Eukaryotic RNA-binding	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48025	OS02G0815200 PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003729	Molecular Function	mRNA binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K13195	CIRBP; cold-inducible RNA-binding protein	-	Spliceosome	ko03041	deepkoala