Gene detail

Detailed information of HSymV2.0_g11.19732_t1 in Hydractinia symbiolongicarpus

Genomic Location: HiC_scaffold_11:11100121...11110595
NR annotation: XP_001624752.2, 1-aminocyclopropane-1-carboxylate synthase-like protein 1 isoform X1 [Nematostella vectensis]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

HSymV2.0_g11.19732_t1

ATGGCGGCGGGGCCCCTTATGATTTCAGAAGTAGCAAGATCTTTTACGAGCATAGAAGTAATGCAAAGAATACCGATGTTAACTGGAAGTCGTGTTTTTGGTTTTGGTTTTGGACCATTAATTTCAATATTCTTTATAAAAGTGGACTTTTGGATCGGTCTGATTCATATAACATACGCAAACATCATTGGACCGGTCCTTTTTGTTATTAATAGTGTTCTCCTTGTGGCTGTGATCTTCTTCGCTCATGATTTATCTCGAGAGTATGATATGAAGCTAAACACAACGGAGAAGGAGAAGAATAATAATTACAAACTATCTGATTCTGAAACTGCCGTGGACGTGATTAAAAGAATACTGCAAACAACTGATACGTTGTTGATTGTCGCCATGTCAGTGTTTTTTGGCATCGTTGATCAATTAATGTTCCGTGTGCTACCCGTACTAATCATCCAGAAGCTACATTTCAGCTATACATTTTTAAACGCATCATTCATCAGTCTTGCATTTTTAAACACCGCTGTTATTGTATTCTTAGTGTATTGGAAAATGTCAGACAAGCAGATATACTACACTGGAGTAAAGTATAAAATGTTCTCCAACCGCATCCAGCGAGCATGTGAGAGTAACTCGTTTCTTCTCAACGCACTTGAAGCGCTGAGAATAAATGCGTATCATATTGAAGACAATCCTAATGGAATCATTAATCTTGGAATATCAGAAAACAAACTTATATATGACGTCGTTCGAGAGAAAATCTCTACCGTAGATATGAAACACATTCCGGAAAAATATTCTCACTATTGCAATTTTTGTGGCAATGATGAATTTCGTGACAAGTTGGCAAGCATGTTCAATCATTACATGAAACCCAAGTTAGCAATCAAACGAGAGAATGTATTTGTTTTTAATGGCAGTGACCCAGCTATTGAATGTTTAGGGTCTGCATTCTGTGACGAGAATGACGGGTTTTTAACGCCGACGCCGTATTATTATGCTTTCAAGAGCGATCTTCGTCAAAGAACTGGTGCCGTCATTTATCCAATTCATCTGCCAAGCAAAAGCGGTGAAAGTGGTTCATATAAAATGACAACACCAGATTTGGAGATCGCCTTACAAGAAGCAAAACAAAAAGGAGTGGCCATCAAAGCCTTGTTGATATCAAATCCATACAATCCATTGGGAACAATATTCTCTTTGGCAGAATTAGAAGAGTATGCCGAGTTTTGTCTCAAACACAATATCCACTTTATCTGTGATGAGATATATTATTTCTCCGTTTACGATGAAGAAGTATCAATAAAGAGTATCTTATCCCTGCCAAATTTCTCCAAATACAAAGATATCATTCATGTGGTTTGGGGATTCAGTAAAGATTTTGCATTGTCAGGGTATCGTTGTGGGATAGTTATAACTTACAATTCTTTCCTTCAGAATGCAATCAGCGAAGTGTCTTTATATACAGCTTTACCATCGTGTGCTCAGTACATACTGGAAGCTTTGATCTCTGATTTCGATTGGATGGATAACCTCGCCAAAGTCAATCATGAGAGATTGAAGAAAGCTTTACTTATCGTCACAAGGACAATGGATGACACTGGTGTAAGCTACATAAAACCTTCAGGCGGTTTGTTTTTATGGTTAAATTTTAAAAACCATCTGAAATCAGATTCCGAAGAAGAAGAGAAAAAGTTATTTGAGTTGTTTATGCAACATGGTGTGTATGTAGCACCTGGATTTGCATTTGGTTCAAGAGAACACGGATGGTTTCGAATTGTATTTTCTGTAGGTGATGAGCAGCTGAAATTAGCCATGAAGAGACTAAAAGCTTGTCTTACAGCATAAAATGGATTGAACGATAAAATCTTGTAAACCAATATTGTTAATCTCAACAGAGATTAATTTTAAAACTGAATTATTATGTGAAGGGCTTCTAACAGCATTTTGTGTTGCTCTCAATGAGACGTATATTTTCATTCTTAACCTTTGCGTAAGCAGTTTTTGTTCTA

Protein

Uniprot

Uniprot term	Description
Q9W698	1-aminocyclopropane-1-carboxylate synthase-like protein 1 OS=Takifugu rubripes OX=31033 GN=accs PE=3 SV=1
Q5E9H2	1-aminocyclopropane-1-carboxylate synthase-like protein 1 OS=Bos taurus OX=9913 GN=ACCS PE=2 SV=1
Q3UX83	Probable inactive 1-aminocyclopropane-1-carboxylate synthase-like protein 2 OS=Mus musculus OX=10090 GN=Accsl PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00155	Aminotran_1_2	Aminotransferase class I and II	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015424	Homologous_superfamily	Pyridoxal phosphate-dependent transferase	Interproscan
IPR015421	Homologous_superfamily	Pyridoxal phosphate-dependent transferase, major domain	Interproscan
IPR050478	Family	Ethylene and sulfur compound biosynthesis-related protein	Interproscan
IPR004839	Domain	Aminotransferase, class I/classII	Interproscan
IPR015422	Homologous_superfamily	Pyridoxal phosphate-dependent transferase, small domain	Interproscan
IPR036259	Homologous_superfamily	MFS transporter superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43795	BIFUNCTIONAL ASPARTATE AMINOTRANSFERASE AND GLUTAMATE/ASPARTATE-PREPHENATE AMINOTRANSFERASE-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0006520	Biological Process	amino acid metabolic process	Interproscan
GO:0008483	Molecular Function	transaminase activity	Interproscan
GO:0009058	Biological Process	biosynthetic process	Interproscan
GO:0030170	Molecular Function	pyridoxal phosphate binding	Interproscan