Gene detail

Detailed information of HSymV2.0_g11.20167_t1 in Hydractinia symbiolongicarpus

Genomic Location: HiC_scaffold_11:21674933...21677261
NR annotation: CAH3161904.1, unnamed protein product [Porites lobata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

HSymV2.0_g11.20167_t1

TTTCAGAAGATAAATATACAAAATTACAAAATGGATCTAAAAAGCATAAAATGGACTACAGAAAGTTTACAGTTAAAAGATTTCGTTGAAACATACAAGTTACCCCAGATCGTTAGCGTTGAAGAAGGGTTCTATGGTACATGCAATGAGAACTCATTCAGCAGTGGACAAAAGTTGAAGTTACATTCAGTAACAAGTGAATTGAGAGCTGTGTGTTATGACAGAAACGAAACATATTGCCAGATACCATTAACATGTCCAAAACTAGTGGAGTTAAAAATGGATAAATCAAAATATTGCAAATCTGTTGCAGACATAGCACAGTTAAATCCCCTACCAAATTACGTTAAAATTCAAAGCGGTTACTTTATAAAAGTTGGAATTGAAGAATATAAGGGGATATATCTTGGAGCAGGTGATACATTGAAAATCATGTTTCGAAGAGATGAAATGTCTTCGTTTCAAAGAAATGAAAAGTTTTTGGTCTTTCAAAATGATAGCGGGGACTTGTTCGAACTGCCTTTTGACTGTTCAGCCGGATTTAAAACGTTTTATTCTCTCGAAACTTATCGTTTAAATGAAATTCTACCAAGAGATGCTGGAAATCTGGAGCATCCTGTGTACTTCCAGTTCACCAACTCAACTCCATATTGCGGTATCTTACAATGCACGCAAATCTGTAACGTTCAGCTTATCATCGGGACAAGTGGAGAAGATCATGTATCGCACGTGTTTAACATTCCATACGATATGGATATTAAAGTGAAAATCGCGAAAGGCACGATAACACACGATAATGACTACGAAAACTTTTGTAGAAACTATCACGATTTTAAAGGAATCGAAGAGCATGTAAGAGAATCTCGCAGTTCTCAAATGTTTAAAACACCATTCGAGGTTTATTCGCACCCCTACAAGCATTATAACAACTCTAATTTATCAAGTAAAAAGAAGAAACCAGTCCCATTACCGCCGATTCCAATAGAAAAACGTCCGGTAAAACCTCCACGAGGTAAAGTTCAAAAATCCGATTCGGATTTCCATCGGGAATTTGCTGCAACTGTTAGTTCTGTCCAGGTTAAACAATCATCTACACCTGGTTTGAACTACGAGCAACCACCCACAGCTATTGTTGAGCCTATCCAGTCTAGGCAACCATCTGCACCAGATTTATACTACCGGCAGCCGCCAACAGCTATTCCTGAATCTACCCAAGGCAACTTGTCAACCACATCTGTTTTGAATTCACAGCAACAGTTTACAGTTTCAGTTAAGTCTATGTTGCCGAACAGGTCAACGGCTCAGACGGAAGTTAAAAAATCTCATGAAGTTAATGAAACACCCGTTCCTGCATCAAGCAAAGAAGAACAACCTGAACCATCTGGAACAGTTGGATTACCAAAGGGTGGATTCCAAAAACAACCCGGTAGCTTCCAAAAACAACCCGGTAGCTTCCAAAAAAATCCGGTTGCAGTAAGACAAATGAGTGTCGGAGAGTTAGGTGAGATTTTAAAGGAACTGAAGTTGGAAAAGCATGTCAATACTTTTGAAGAAAATTTAATCGATGGGCATTTATTATGCATGTTAACTGATCAAGAACTAAAAGATATTGGTTTAAACGGCTTTGAAATTAGAAAGATAACTAGTTATAAGGAAGGTTGGCGTCCGAAATTATAGAATGTGAACGGTAACTTTTGTTATGGTGATCACATATTTTCTCAATTAAGTTTTACCACTCCGGGTAGGTATACGTGCCCGCGGTAGGTATTGTGCGTGTTTGCTATTTCTAAGGTGCCGGTATAggaagagcgctttagcaattttgtgcaaccttaattaaacgcgggaaatttttttttttgcgtattgtcaactgtgtactcagagttctttttctctttttgacaatcttggacgggagaaagaaaaaagagccctgaggacgaggttgaagtatTGAAATATTATTAAGTCTTAATACACCAAGAGGTTAGTTTGTACATAAGAGATATTTCTATATGGTTTGAAGCAATAACGCTacctcgcctccatggtttttgcctttttgactcgaggctggcggcaaagaaacatgctagccgtcagcgctagcggttttaacatcagacaagaaaccctggggatgacaatgacgatatcattattttttacacaaacgtcatgggtttgcgctataagtcgtgtgagtGTGTAATATTCTTGCTTCCATAAATTAGCGCACGCAAGGTAGCGCACGAACACAAACTGGAACTTGAGGTTGTATCTGTAAAAATATTTTCACCGCATAGGGTGACGAGAGACATAGAAA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00536	SAM_1	SAM domain (Sterile alpha motif)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001660	Domain	Sterile alpha motif domain	Interproscan
IPR013761	Homologous_superfamily	Sterile alpha motif/pointed domain superfamily	Interproscan
IPR052281	Family	GRB2-associated and regulator of MAPK	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14454	GRB2-ASSOCIATED AND REGULATOR OF MAPK PROTEIN FAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K14788	NOL10, ENP2; ribosome biogenesis protein ENP2	-	Ribosome biogenesis	ko03009	deepkoala