Gene detail

Detailed information of HSymV2.0_g12.21692_t1 in Hydractinia symbiolongicarpus

Genomic Location: HiC_scaffold_12:18842146...18847611
NR annotation: XP_047136381.1, protein canopy 4-like [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

HSymV2.0_g12.21692_t1

GATTAATCGAAGGGATTTTTGTTTTAAACTATGATAGATCTGGCTTGCATATTACGCACGTGAGTGTAACTTGCGACGCAGTGGATCGTAAACTAACAAACAAAACAAACACTCGAATTTCGAGTTAAAAGTATGCGACGCACGAGTTGATCAGCGTGATCTTTGTGCAGAACTCACTCGCTGCATGTTTTTTGTTTTCAAAATTCACTGAGCATTTGATAGTTTTAATTTTAAAAAATATCCAATCGAATTCAAAAGAGTGTAGTAACATTCAATAAATCACAGAGGATTGTTTCACCCCGCAGACATTCCACATCAAGATGGAGATACAAAAATATATTGTTGTGTTGTTCTTATTTCTTTATGCTGTTTATACGAAAAAAGAAGAAGAAAATTCAGAAGAGAAAAAACCAAGACATCCAAAATTAGTTGAATACTCCAAAAACGCTCATAAAAGACCTACAAAATGCCAAGTGTGTCGTGTGCTTGCACAAGAATTATCTATCGAAGTCAACAAAACTAAAGATGTGAAAGAAAGCTTGTGGCTAACAAATCGTCTGGACGGAGAAGAAAAAATTGACGAAAGAAATGGAAAGAAAATTGACTACAAGACTTCCGAGCTGAGGTTAATGGACATTTTGGAAAAAGTATGTAAAAATGTGGAACAATATCGATCAATTGCTGGGCCTGATTTTCCATATTTAAAAGGAGTGAAAAGCATGTTTAGACAACAGTTGGAAGACATGATGGGAACAAGTGGGTTAAAACTAAAGTTAGATGCCCCTGAATCTATGGTGGAGGACCCAACGTTTGAAATAAGCAGAATGTATTTCCAGTGCAATCAAATGATTGAAGAATACGAGGACGATATAATGGATTGGTACATACACAAACCTAAAGATGACCCATTAGAATTTCTTTGTGCCGAAAGAGTTTTGAATCCAAAACAACATGATTGTTTAGCGGCGTCCACAGACATTCCTGATTTTGCAGAGAAACCAGCAAGCGTGGACAAAAATGGCGAAAAAGTCGATTTCCACAGTGGTAAAAAAATGGAGTTATAATTTTTATTTTTCGCACGCCTTGTAattattaacatttcattttattaatattattttcttgtagtctattagttaCATTTAAATTGTAATTTTGTTTTTTGATATTTCTGAATGCATCAAACACGATCTTTTTTGAATGAAAGAGagtgctcattttgagctatgcagatccaattagggtcattagacaactccatgtaaaattccacagcccacacaatgtaccatctccccaatttccctcacacggcttgggttaacccagggctatgttaacattcactcgcccatattgaattaccgccaaggggaaacgaaccccggtctcccgcacaaagtggtagagttataaccattaagctactaagcaattaccactaagctaaaacggttcaactTACAAATTTAAATCTTCCcaatcttgttcccagggcttctttttctctttctgatatgtggctgttcgcgccagcacgcatatcagaaagggaaaaagaagctctggggacgagattgaaatcttcccgaattcttttcttaaatagggtttcttaaatagtctattTTTAAATAAATTATGCTTCTTTTACTGGTAGCGTGGTTGATTGAGTCACGATTTCTGGGCCTTGTTTTTTCCAGGAGGGACAATTATAACTTCTCAGTTTTATGTAATTCCCTGATAGGCATGTACATTCAAAATCCCAATAAAATAGATATCCTATATAACTTCACATTGCATTTGAGGATGAGTCATTAAGTTTATTTAATGTTTGCCACATTACATTGATTATGTCGATTGGTAATGGATTAAAGTTCTGTTTCGGAGTATTAGATGTTGTTCTCTTGACGAATCTATCAGCTAAAGTAGCATCTATGTCACGTTACACAGTATAAACTACTTTTATAAAATAAGGATTATATATTTTGGATTACGTTACTAATATCATATATTTACATGTGCGCTGCTACTAACATCAGTACGTTCTTCTCTCTTAAGTGCGTTTTGGTCTCCTCCCCGGGGACTGGACCGTGCTAACATGACCACGCCACACCTACGTATGAACAAAAACAATTAAGATATTTTTCATTTAATAGATCGAACACAAATGCAGAGCTTTGAGGTTTATGCTTTGCCTACAATTGTTGCGGGTTTTTTAAAAAAATGAAAACATGAAATATACACTGTGAGCAAACTCAATGCCACTAAAACCTTAACGCCTAATCCTTCTTATATAAATGAAGGGCGCGAAAGAAAAAAGTCATGCTATGTAATCCcggaatagcaaacgcgatatatgtatggcgggcaaatttctgacaagtttacttgataTTACTCGAAGTATTCTGCAAAAATAAATATGGCGAAAAAGAACTGAATTTTTTTTTTCTGATAAACCAATTTTATGTTTTTGTTGCTTTAGACTTACAACGAAAACTATAA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF11938	DUF3456	TLR4 regulator and MIR-interacting MSAP	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR021852	Domain	Domain of unknown function DUF3456	Interproscan
IPR042415	Family	Protein canopy homolog	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13341	MIR-INTERACTING SAPOSIN-LIKE PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
-	-	-	-

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K22816	CNPY3_4; protein canopy 3/4	-	Chaperones and folding catalysts	ko03110	deepkoala