Gene detail

Detailed information of HSymV2.0_g12.21697_t1 in Hydractinia symbiolongicarpus

Genomic Location: HiC_scaffold_12:18858794...18864538
NR annotation: XP_020892142.1, serine hydroxymethyltransferase, mitochondrial [Exaiptasia diaphana]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Uniprot term	Description
Q3SZ20	Serine hydroxymethyltransferase, mitochondrial OS=Bos taurus OX=9913 GN=SHMT2 PE=2 SV=1
P34897	Serine hydroxymethyltransferase, mitochondrial OS=Homo sapiens OX=9606 GN=SHMT2 PE=1 SV=3
P14519	Serine hydroxymethyltransferase, mitochondrial OS=Oryctolagus cuniculus OX=9986 GN=SHMT2 PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00464	SHMT	Serine hydroxymethyltransferase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015422	Homologous_superfamily	Pyridoxal phosphate-dependent transferase, small domain	Interproscan
IPR049943	Family	Serine hydroxymethyltransferase-like	Interproscan
IPR015421	Homologous_superfamily	Pyridoxal phosphate-dependent transferase, major domain	Interproscan
IPR039429	Domain	Serine hydroxymethyltransferase-like domain	Interproscan
IPR015424	Homologous_superfamily	Pyridoxal phosphate-dependent transferase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11680	SERINE HYDROXYMETHYLTRANSFERASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004372	Molecular Function	glycine hydroxymethyltransferase activity	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0006565	Biological Process	L-serine catabolic process	Interproscan
GO:0006730	Biological Process	one-carbon metabolic process	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0019264	Biological Process	glycine biosynthetic process from serine	Interproscan
GO:0030170	Molecular Function	pyridoxal phosphate binding	Interproscan
GO:0046653	Biological Process	tetrahydrofolate metabolic process	Interproscan
GO:0046655	Biological Process	folic acid metabolic process	Interproscan
GO:0050897	Molecular Function	cobalt ion binding	Interproscan
GO:0070905	Molecular Function	serine binding	Interproscan