Gene detail

Detailed information of HSymV2.0_g12.21953_t1 in Hydractinia symbiolongicarpus

Genomic Location: HiC_scaffold_12:21759778...21773668
NR annotation: XP_012557822.1, RNA-binding motif, single-stranded-interacting protein 1 isoform X2 [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

HSymV2.0_g12.21953_t1

TTTatagatatataaatagaacataaataaagtgaaattatatagataatataCTACACGAAAGAGGTTTAGACAAATCAGAAGAAAGGCTGTATGGAAATATTATGGTCCAGACATCATTAAATGAAACACGGTACCCTGTGGAAACAATAAAAGGACAGGCGGAACCGGATGCTTCTTCCCCGAGTGATAAGAACATGATCAATGGGAGTATCATTGATTTAAAGAAACCTGCCAAAACTCGGGGGGAGACAGAGTATTGGCGCCACAGTCCTGAACTGGACACCAACGAAAATATGAACAAATTAAACAATGATAAAGACGAAATAAACGATGCTAAGAATGATAAAATTGAGCGAAAGTCTCCTGTTCCGCAACAGAAACGGGGTAGCACACCTGTTAGTACAGAGAAAACAAAACAAACTGCTGACAAGAGACAGACTCGATCAAATCAAAACACATCCAGCTATGGGCGATCCTTTCGACCAGGTCTAGTGCCCACTCCAAACGTTGCATACCCGTGGCCAAATCATATCAACTGGCAAAATTATTACTTAGCAAGCCAACAGAGGCATGCGAGTCCGGTGGTTTATGGATATCAACCAGCATACTATCAATACGCATCAACAGTGAACAGCCATCACTCTACAAATAGCTCACCGACTTCCAATCATATGTATGCAAATTCATACACAGATACACAAGATGGCGAGAAACTTAGTAAAACAAACTTATACATCCGAGGCTTGCATAGTTCCACGACAGACGAAGATTTAGTGAACATGTGTAGAATATATGGTAATATTATTTCGACAAAGGCAATACTACACAAAGACACTAACCAATGCAAAGGGTATGGCTTTGTTGATTTTGACAGTCCAGTTGCAGCACAAAGAGCCGTCAGTGCTCTACAAAACAAGGGGATACAGGCACAAATGGCTAAACAACAAGAACAAGATCCCACAAATTTATATTTATCTAATTTACCCAAGCAAATCGACGAGCAGCAATTACAACATTTATTAGCATCGTATGGAAATGTAATATCAACCAGGATTTTAAGAGATACTTCAGGTTCCAGTAAATGTGTCGGATTTGCTAGATTGGAATCGACAGAAATTTGTGAGCAAGTGATCGATAAGTTAAATGGACAATATTTATCAGGCTCCAACGAACAATTATTAGTGAAATTTGCAGATGGTGGACCAAAGAAAACGAAACAAGATAAAACTTGGAGAAATCCGTCTGAGGATTATATGAATTACGGTGTGAGAAGTCCTGTTTCCAGGACAATGAGCAATCCACCAACAGCACGAGTCACACCAGTCATCCAAAGTCCAATGGGTCATGGTGCAGGGACAAACATAGCTGCTTACCACATGCCTGTTACAGGTGTAAGCTGGGGTGTTCAACCTCAATCATATACCGTGCCTGTATCTCCGCATCAGTTACCTACAGATACTATCCAATCAATGCACTCTCCCATGTCTCAAATGAACAATCAGATGGCACAAATGCATATCCATGGTGGAACTAATCAATACATCATGCCAGCACCAGGAGGGTATAGTCAGCAAAATTCATGGCAGATGACTCAAACGCTTCCTCAGGAGTCGCCAGTAATTATGACGGCAACCGAAGTTGAAAGTAACTATCCTCCTCCACATATGCATCACCATGGCAACGAACCAATATATTCTGATGATCAACAAACTAGAGTGGTGTACGCCTATCAACGGAAGTGAGGCACTGAACTTAGATGAGGAACACGTTTTTTAATCATTTTTTGTTATTGTTTTAACCTGTGTACAAAAATGAATTTTCTTTCTTTTGAAGAGATAGAAGGTTTTTATTTCAGTCGTTAATAATTTTTACATTTTTTGTTGTCGTAATTTTGTTTTTGTATTGTGAATGTGATGAAAGATGGAAGTTATTTGTCTGCAATTTTCAGATATTTCATCACCGTAACCGTACCAATTTTTAAGGAGAATTTTACGGGATTAATTACACCCGAGATTTATTTTCTGTAATTTGTAAAATTATTAATACTCGTGAAACACAAAAATTTTACGACTAGCGAAAATTGGTACAtctctttaataatagccgtcgtctgtctgtgtgtccacgaaagct

Protein

Uniprot

Uniprot term	Description
Q3ZBP3	RNA-binding motif, single-stranded-interacting protein 1 OS=Bos taurus OX=9913 GN=RBMS1 PE=2 SV=1
P29558	RNA-binding motif, single-stranded-interacting protein 1 OS=Homo sapiens OX=9606 GN=RBMS1 PE=1 SV=3
Q3ZC34	RNA-binding motif, single-stranded-interacting protein 2 OS=Bos taurus OX=9913 GN=RBMS2 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR050502	Family	Eukaryotic RNA-binding	Interproscan
IPR002343	Family	Paraneoplastic encephalomyelitis antigen	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48025	OS02G0815200 PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003729	Molecular Function	mRNA binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:1990904	Cellular Component	ribonucleoprotein complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K24990	RBMS; RNA-binding motif, single-stranded-interacting protein	-	Domain-containing proteins not elsewhere classified	ko04990	deepkoala