Gene detail

Detailed information of HSymV2.0_g12.22223_t1 in Hydractinia symbiolongicarpus

Genomic Location: HiC_scaffold_12:24675447...24679712
NR annotation: XP_031573594.1, WD repeat, SAM and U-box domain-containing protein 1-like isoform X4 [Actinia tenebrosa]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Uniprot term	Description
Q5FVN8	WD repeat, SAM and U-box domain-containing protein 1 OS=Rattus norvegicus OX=10116 GN=Wdsub1 PE=2 SV=1
Q5ZMC3	WD repeat, SAM and U-box domain-containing protein 1 OS=Gallus gallus OX=9031 GN=WDSUB1 PE=2 SV=2
Q8N9V3	WD repeat, SAM and U-box domain-containing protein 1 OS=Homo sapiens OX=9606 GN=WDSUB1 PE=1 SV=4

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400	WD40	WD domain, G-beta repeat	Repeat	Interproscan
PF07647	SAM_2	SAM domain (Sterile alpha motif)	Domain	Interproscan
PF04564	U-box	U-box domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019775	Conserved_site	WD40 repeat, conserved site	Interproscan
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR001680	Repeat	WD40 repeat	Interproscan
IPR001660	Domain	Sterile alpha motif domain	Interproscan
IPR020472	Repeat	G-protein beta WD-40 repeat	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR052085	Family	WD repeat, SAM and U-box domain-containing	Interproscan
IPR013761	Homologous_superfamily	Sterile alpha motif/pointed domain superfamily	Interproscan
IPR011047	Homologous_superfamily	Quinoprotein alcohol dehydrogenase-like superfamily	Interproscan
IPR003613	Domain	U-box domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46573	WD REPEAT, SAM AND U-BOX DOMAIN-CONTAINING PROTEIN 1	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0004842	Molecular Function	ubiquitin-protein transferase activity	Interproscan
GO:0016567	Biological Process	protein ubiquitination	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K24764	WDSUB1; WD repeat, SAM and U-box domain-containing protein 1	-	Domain-containing proteins not elsewhere classified	ko04990	deepkoala