Detailed information of HSymV2.0_g13.22440_t1 in Hydractinia symbiolongicarpus

Genomic Location: HiC_scaffold_13:8038276...8051607
NR annotation: XP_047142101.1, pre-rRNA 2'-O-ribose RNA methyltransferase FTSJ3 [Hydra vulgaris]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q5RJT2pre-rRNA 2'-O-ribose RNA methyltransferase FTSJ3 OS=Rattus norvegicus OX=10116 GN=Ftsj3 PE=1 SV=1
Q9DBE9pre-rRNA 2'-O-ribose RNA methyltransferase FTSJ3 OS=Mus musculus OX=10090 GN=Ftsj3 PE=1 SV=1
Q5RAS1pre-rRNA 2'-O-ribose RNA methyltransferase FTSJ3 OS=Pongo abelii OX=9601 GN=FTSJ3 PE=2 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF07780Spb1_CSpb1 C-terminal domainDomainInterproscan
PF11861DUF3381Ribosomal RNA methyltransferase Spb1, DUF3381DomainInterproscan
PF01728FtsJFtsJ-like methyltransferaseFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR012920DomainRibosomal RNA methyltransferase, SPB1-like, C-terminalInterproscan
IPR050082FamilyRibosomal RNA large subunit methyltransferase RlmEInterproscan
IPR015507FamilyRibosomal RNA large subunit methyltransferase EInterproscan
IPR024576DomainRibosomal RNA methyltransferase Spb1, domain of unknown function DUF3381Interproscan
IPR028589FamilyAdoMet-dependent rRNA methyltransferase SPB1-likeInterproscan
IPR029063Homologous_superfamilyS-adenosyl-L-methionine-dependent methyltransferase superfamilyInterproscan
IPR002877DomainRibosomal RNA methyltransferase, FtsJ domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR10920RIBOSOMAL RNA METHYLTRANSFERASEInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005634Cellular ComponentnucleusInterproscan
GO:0006364Biological ProcessrRNA processingInterproscan
GO:0008168Molecular Functionmethyltransferase activityInterproscan
GO:0000463Biological Processmaturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)Interproscan
GO:0000466Biological Processmaturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)Interproscan
GO:0001510Biological ProcessRNA methylationInterproscan
GO:0005730Cellular ComponentnucleolusInterproscan
GO:0008173Molecular FunctionRNA methyltransferase activityInterproscan
GO:0008650Molecular FunctionrRNA (uridine-2'-O-)-methyltransferase activityInterproscan
GO:0016435Molecular FunctionrRNA (guanine) methyltransferase activityInterproscan
GO:0030687Cellular Componentpreribosome, large subunit precursorInterproscan
GO:0031167Biological ProcessrRNA methylationInterproscan
GO:0008649Molecular FunctionrRNA methyltransferase activityInterproscan
GO:0032259Biological ProcessmethylationInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K14857SPB1, FTSJ3; AdoMet-dependent rRNA methyltransferase SPB1EC:2.1.1.-
Ribosome biogenesisko03009deepkoala

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