Gene detail

Detailed information of HSymV2.0_g13.22812_t1 in Hydractinia symbiolongicarpus

Genomic Location: HiC_scaffold_13:12673784...12683774
NR annotation: XP_047142725.1, RNA-binding protein cabeza isoform X2 [Hydra vulgaris]

Gene Structure

Sequence

Uniprot

Uniprot term	Description
Q27294	RNA-binding protein cabeza OS=Drosophila melanogaster OX=7227 GN=caz PE=2 SV=2
Q9AST1	Transcription initiation factor TFIID subunit 15 OS=Arabidopsis thaliana OX=3702 GN=TAF15 PE=1 SV=1
Q28009	RNA-binding protein FUS OS=Bos taurus OX=9913 GN=FUS PE=2 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan
PF00641	zf-RanBP	Zn-finger in Ran binding protein and others	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR034870	Family	TAF15/EWS/TLS family	Interproscan
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR001876	Domain	Zinc finger, RanBP2-type	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR036443	Homologous_superfamily	Zinc finger, RanBP2-type superfamily	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23238	RNA BINDING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003712	Molecular Function	transcription coregulator activity	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K13098	TLS, FUS; RNA-binding protein FUS	-	Spliceosome	ko03041	deepkoala