Gene detail

Detailed information of HSymV2.0_g13.23051_t1 in Hydractinia symbiolongicarpus

Genomic Location: HiC_scaffold_13:16060121...16066150
NR annotation: XP_046366341.1, A-kinase anchor protein 1, mitochondrial-like [Haliotis rufescens]

Gene Structure

More details in Jbrowse

Sequence

CDS

HSymV2.0_g13.23051_t1

ATGATGAGCATCAGAACTGTCTTAGCTTTGCTTGTTCCCACATCCATACTTGGATTTTCATTTTGGTGGTGGAAGCGGAAGACAAAAAATGAAATTTTAAATGTAGAGAAACAAAACAGCCTATTGGAGCATGACACAAAATGCACTATGCTTTCCGAGTCTCTACAGAAATCTCCTTCAAAAAGAGAATACCCTGATGATGTGGACGACTCTGAAATTTATATCGAAGAAAGGATTGAATCAATTCCTGTAGAAAAACCAAAAATAAGTTCTTCCTCTATTAAGAGGAAAGCTGAAGATGGTGATGACGACAACTTGTCTGATAGTTTCATCGAATATGCCACAGAATCTGTAGTGAGTTATGTAAGTCAAGATGAAGAACCTGTTAAAGTGTGCATAGAAGAAAAAATCATTAACTTGGATGAAAACTTATTAGAGTCTGAAAACACGAACTTGTTTGGAGAATTTGATCAATGTTCTGAAGAGGTGACACTTTGTGATATTCAAAAATCTGACGTAAAAGTTAGTTCAACTGTAAAAGAGGGTGTACCTCTGAAGCGCTTGAGGCATCAAAGCAGTTGTGATGGCGATAGTGCATTTGTAGAAGACTACAGCTCAGATAATATATCTATCAGTGGCTCTGACTCATTAAAGTCTCCTGAGTGTAGTACCATAGGTGAGTGTCCTAACTCTTCCTTGGAAGATGCTGTTTCTGAAGAAGTATCTTGTAAAGAAATTGCAACTGAGGAAAAATTTAGAGACTGGTATGGTCCTGCGTTAGAATCAGTAATACGAGAAGATATAAACTGGGGCAGTACTCCCATGTCAGATAGTGAAGGTGATGTTTCTGATGCTTTGCTAAATAAAACTATGACAATAGGTGGTGTCTCTCTAGCTAAGTTAAGCATATCTATTGAAACTGAAGTATCTGAACGGAAAAAAAATATTGGGAAAAAATCAACACCCAAAAAAAGCCCAACTAGCCCAAACTTCAGGTCAAGAAAAGATTCGAAAAGAAAAACTGTGAAAGATAGTCCATCCAAAAAGCAGACCCCTACAAAGAGCTCCTTTTCAAAATTTGAATCTTCTAAAAGTAAGAAGGACTCACCAAGAAAACAAACACCAAAGGCAAAAAAAGTGGACACCAGTGATAAAGGCATAGATGGGCCATGGCGTGATGTGGACACTGGGGAAGTTGACAACACCCAAAAAAGCTTTGATTATGAATTTCCTGAGGAGTTGAGTGGAAAGTTAATTGGGAGATCTGGAAAACATGTAAAGGAACTAAAACAAAAAACAGGAGCAACTATTTGTGTTGAGCCAGAAGTAAGAGGAGACAAACGAGTTGTTAGTATAACAGGTTTGCAAAGTCAGATTAAAAAAGCTGAATCATTACTAAGAGCGAGGTTTGCTACACCTTTGAAAAAGATTGTCGACAAAGATATTTCAACAACAACTCAGAGTATTATCTATACTCGTTTGTTAGAAGGAAAAAAAAATGACGTCATTGTGACTGCTATTGTTGATGTGGGCCATTTTTTTGTTCAGATTTTCAGCCCAGAAGTTGACGAAAAAATTGTTCAGTTACAAACAGAATTAGCAAAGTGTTATACTTCTCCAAGATTGAAGTATATGTATTCTGACCAAGATTTACCCAAAGTCAATGATTACTGTGCCTCGTTTATTGATAACACGTGGTGCAGGTTGAAAATCATTGAATTAGTACCTGAAAACCTAGCTGTTGTGACTTATTTGGATTATGGAGGTAATGCTACAGTGCCAACCACTATCTTGCTCAAAATAAGGCCTGATTTTATGGATGTCCCGGTTTTGGCAGTAGAATGTCAGTTAGCGAATGTTGCACCACATGAAAATGATGTTGAATATCCATATGCAGCAACCAACGTATTTGGTCAGCTCGTGGAGGGAAGGGTTCTTCAAGCAGCTTGCAAAACAAACGAAAACAGCGTTGAACGTGTCGAAATCTATTACTATGATGAAGAGAATCAAAGGGAGGTATGTGTGAACAAGGAACTGGAAAGTTGGGGACTAGTTGGATGGAGTGAAGTTTAG

Transcript

HSymV2.0_g13.23051_t1

TCCACGAGGGTTTGTTTTGTCGCATCATCGTGTAGTAAAACATTGTCTTTTTTGACTATATAGCTAGCTATAGGCATACTTTTTCAGATTTGCATAAGTTACAAGTTTTTACAGGAATCTATTTAAATAAAGTTTAAAATGATGAGCATCAGAACTGTCTTAGCTTTGCTTGTTCCCACATCCATACTTGGATTTTCATTTTGGTGGTGGAAGCGGAAGACAAAAAATGAAATTTTAAATGTAGAGAAACAAAACAGCCTATTGGAGCATGACACAAAATGCACTATGCTTTCCGAGTCTCTACAGAAATCTCCTTCAAAAAGAGAATACCCTGATGATGTGGACGACTCTGAAATTTATATCGAAGAAAGGATTGAATCAATTCCTGTAGAAAAACCAAAAATAAGTTCTTCCTCTATTAAGAGGAAAGCTGAAGATGGTGATGACGACAACTTGTCTGATAGTTTCATCGAATATGCCACAGAATCTGTAGTGAGTTATGTAAGTCAAGATGAAGAACCTGTTAAAGTGTGCATAGAAGAAAAAATCATTAACTTGGATGAAAACTTATTAGAGTCTGAAAACACGAACTTGTTTGGAGAATTTGATCAATGTTCTGAAGAGGTGACACTTTGTGATATTCAAAAATCTGACGTAAAAGTTAGTTCAACTGTAAAAGAGGGTGTACCTCTGAAGCGCTTGAGGCATCAAAGCAGTTGTGATGGCGATAGTGCATTTGTAGAAGACTACAGCTCAGATAATATATCTATCAGTGGCTCTGACTCATTAAAGTCTCCTGAGTGTAGTACCATAGGTGAGTGTCCTAACTCTTCCTTGGAAGATGCTGTTTCTGAAGAAGTATCTTGTAAAGAAATTGCAACTGAGGAAAAATTTAGAGACTGGTATGGTCCTGCGTTAGAATCAGTAATACGAGAAGATATAAACTGGGGCAGTACTCCCATGTCAGATAGTGAAGGTGATGTTTCTGATGCTTTGCTAAATAAAACTATGACAATAGGTGGTGTCTCTCTAGCTAAGTTAAGCATATCTATTGAAACTGAAGTATCTGAACGGAAAAAAAATATTGGGAAAAAATCAACACCCAAAAAAAGCCCAACTAGCCCAAACTTCAGGTCAAGAAAAGATTCGAAAAGAAAAACTGTGAAAGATAGTCCATCCAAAAAGCAGACCCCTACAAAGAGCTCCTTTTCAAAATTTGAATCTTCTAAAAGTAAGAAGGACTCACCAAGAAAACAAACACCAAAGGCAAAAAAAGTGGACACCAGTGATAAAGGCATAGATGGGCCATGGCGTGATGTGGACACTGGGGAAGTTGACAACACCCAAAAAAGCTTTGATTATGAATTTCCTGAGGAGTTGAGTGGAAAGTTAATTGGGAGATCTGGAAAACATGTAAAGGAACTAAAACAAAAAACAGGAGCAACTATTTGTGTTGAGCCAGAAGTAAGAGGAGACAAACGAGTTGTTAGTATAACAGGTTTGCAAAGTCAGATTAAAAAAGCTGAATCATTACTAAGAGCGAGGTTTGCTACACCTTTGAAAAAGATTGTCGACAAAGATATTTCAACAACAACTCAGAGTATTATCTATACTCGTTTGTTAGAAGGAAAAAAAAATGACGTCATTGTGACTGCTATTGTTGATGTGGGCCATTTTTTTGTTCAGATTTTCAGCCCAGAAGTTGACGAAAAAATTGTTCAGTTACAAACAGAATTAGCAAAGTGTTATACTTCTCCAAGATTGAAGTATATGTATTCTGACCAAGATTTACCCAAAGTCAATGATTACTGTGCCTCGTTTATTGATAACACGTGGTGCAGGTTGAAAATCATTGAATTAGTACCTGAAAACCTAGCTGTTGTGACTTATTTGGATTATGGAGGTAATGCTACAGTGCCAACCACTATCTTGCTCAAAATAAGGCCTGATTTTATGGATGTCCCGGTTTTGGCAGTAGAATGTCAGTTAGCGAATGTTGCACCACATGAAAATGATGTTGAATATCCATATGCAGCAACCAACGTATTTGGTCAGCTCGTGGAGGGAAGGGTTCTTCAAGCAGCTTGCAAAACAAACGAAAACAGCGTTGAACGTGTCGAAATCTATTACTATGATGAAGAGAATCAAAGGGAGGTATGTGTGAACAAGGAACTGGAAAGTTGGGGACTAGTTGGATGGAGTGAAGTTTAGTTTTTTGTTGGATAAATCGTAatattatatacatatatacatatagtgttcagatttttattattaa

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00567	TUDOR	Tudor domain	Domain	Interproscan
PF00013	KH_1	KH domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002999	Domain	Tudor domain	Interproscan
IPR036612	Homologous_superfamily	K Homology domain, type 1 superfamily	Interproscan
IPR035437	Homologous_superfamily	SNase-like, OB-fold superfamily	Interproscan
IPR039117	Family	RING finger protein 17	Interproscan
IPR004088	Domain	K Homology domain, type 1	Interproscan
IPR004087	Domain	K Homology domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16442	RING FINGER PROTEIN 17	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K16518	AKAP1; A-kinase anchor protein 1, mitochondrial	-	Protein phosphatases and associated proteins	ko01009	deepkoala