Gene detail

Detailed information of HSymV2.0_g13.23058_t1 in Hydractinia symbiolongicarpus

Genomic Location: HiC_scaffold_13:16174463...16187284
NR annotation: XP_047141222.1, SCF E3 ubiquitin ligase complex F-box protein grrA isoform X1 [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

HSymV2.0_g13.23058_t1

ATGTTTCTAACTACGTTGAATTCCAAAAGAAACGGAGAAATTATAAAAAGATTATACCAACTCCATTTGGTGAGTTGCTGTGACGGTTTATTTCAACTTCTCGATAAAATTGATTTCAACCTGAACGATATTAAAGAGAGAAGAAATTTGAACATGGCTTTATTTGCACCGACTGTAAAATACTGTGAAAACATTTTGAAGCAGGTATTTGAATGTACATTGACATCAACATCGACAACTGCAGAGACACTGTCTGATGAAACAGAAGCATGTCCTATAAACATCACCGAAAAAGCTACAGAATTTTGTGAGCAGTACAAGCTTGATTGCAGTTCAAGTAAAGTTTTTGTAAATAATATTGACTTTAAAGTAAAGCAAAGAGAGCTATGGGACTTTTTTGAGTACTTTGGTAAAGTGTTGAGGTGTAGTATCATTAAAGACAGGAAGACCAAAAGATCAAGAGGGTTTGCATTTGTTATTTTTTCGAGTCCACAGGATGCTAACTCTGCAATAAATGCTAAAAATTATGAATTACGCTTAAACGGGAGGGTGATGGTTGTCAAACCAGCTACTCGACAGAAAAAATCAACTAAGTCAGAAGAAAATACATCACTTTCTAAAGCTGAGCAAAAAATGAAGGATGCTGCACAGTATTTTTTAAATAATGACTTGGGCGAACAGAAATGTCAGTTGGAAAAAGAAATATGTCCATTTAAAGTTCTTTGTGATGACATGATTCTGGAGATATTTTCCTATCTAGATCTTATTACAAGAATAAAAATCGAATTAGTATGTAAAAAATGGCAGAACCTTGCTATTGAGTCTTGGGGAAATGTTCACCATGTTGACTTTCATGGTATATTTCAAATATCTCACAAATATGCAGGTTTAACTGATCGAGTTTTGATATCATTATTAAAGAAAGGTTGTCAAAACCTCATATCACTCGATCTTTCTGCCTCTCCATATCTTCTCAGTCATTACAGCTTGATATATATTGGAAATATATGTGAAAAGTTGGAGAGCATAAACTTATCTTTTACTTCTGTGCAGAACAAAACATTGAAACATCTTGGCTCAAAACTTTTGCAGCTTAAAAAAATTAATCTTGCTAGGTGCTTGCATGTTGGTGAAAAAGGTCTGTGGTGGTTGTTTAAAGATTTAAAACACTTGGAATATTTGAAACTTACAGAAACAACAAGACTTTCGGGAAAATGCTTGTACATGCTTCCACCTACATTAAAAACCGTTGATTTCAATACGTGTTCAAAGCTCTCAGATCTGGGATTGAAAAATCTGGCAATGCGATGTCCAAACTTGACCAATATTAATATTTCGTTATGTTTGTCGATCACCAATGCTGGTGTAAATGCACTATTAGAAACTTGTACAAACGTTTTTAACTTAAGCATGAAAGGTTTGAGCCCAACACTTGTGACGTCACGTGGTCTTCTGTCTCTTCGCAAGTTAAACAAGTTGATATCTCTCGACATCAGTCAAAATAGTTCAGTTGATGATGACGTCATTAAGACTGTGAGCAGGTCCTGCTCCAAATTAAAGTGTTTAAACATAGAAGCATGTCATGGGGATATAACCTGCGAGGGAATCAAATCTCTTTGTTTACTGGACGAATTGACTGACTTGAATATCAGTTACATAGTCAAGGTTTGCACTGAGTGTTTATCCGAGTTGGCGTTGCAAGGAAAACTAGAAAAGTTGTTGGTTAAATCTTGCCCAGGAATTTCTAATGAAGGAGTTGTTACCTGTCTTATTTATTTGGATTCGCTTCACACGTTCGATCTAAGTGGATGTTACACGGTTGATGATGGTTTCATCGACGATAATCGACTAAAAAATGTGCTGCGTCAGCATATGACATTGGATTTAATACTAGGAGCTAGCGAAGTGACAGAAGAAGGGTTGACGAAACTAAAAGAATTTTTTACTTGGTGTAATCCTACTTTACAGAATCTTCGTGTAAACATGCTCAGAAATGACCGTGATCCAATGTATATAGAATATTCAGACGAGGACGATGATTTCgacgaagaagacagagaagccggagaagaaaaggaagaaACACAACTACAACATAATCTTCGCCCATGTGAATCTGAGTTAGAATTTGATGTGAATGCTGACTATTCGATGGTTGAAGAAGACGGGGAAAGCCTTTATGTTGTGGAGAAGTGTTCGCCTTTAAAACAAGATAAGGACTTTCTAGTCAACGACAGGGAAGGTTACCTTGTGGAGCATTTACAAACGGCATTTTCAAATTTGGAAGAAAATTTTCCAAATACGGAAGAAAATTGGGATGATGAAACTGACGGCAGCCGAGTATGGGAAGTGGCTGCAGAAAGTTTACATTATTCAGACGAGATCGATGTTGACGATGATTACTTAGAAAATGATGACGTGAGCAGAAATGAATTAATTGGTTAA

Transcript

HSymV2.0_g13.23058_t1

Protein

Uniprot

Uniprot term	Description
Q28IQ9	Cold-inducible RNA-binding protein OS=Xenopus tropicalis OX=8364 GN=cirbp PE=2 SV=1
Q9CAE4	U11/U12 small nuclear ribonucleoprotein 31 kDa protein OS=Arabidopsis thaliana OX=3702 GN=SNRNP31 PE=2 SV=1
Q60990	RNA-binding motif protein, Y chromosome, family 9 OS=Mus musculus OX=10090 GN=Rbmyf9 PE=2 SV=3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00646	F-box	F-box domain	Domain	Interproscan
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006553	Repeat	Leucine-rich repeat, cysteine-containing subtype	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR001810	Domain	F-box domain	Interproscan
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR036047	Homologous_superfamily	F-box-like domain superfamily	Interproscan
IPR032675	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13318	UNCHARACTERIZED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0019005	Cellular Component	SCF ubiquitin ligase complex	Interproscan
GO:0031146	Biological Process	SCF-dependent proteasomal ubiquitin-dependent protein catabolic process	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan