Detailed information of HSymV2.0_g14.24212_t1 in Hydractinia symbiolongicarpus

Genomic Location: HiC_scaffold_14:9101577...9116838
NR annotation: AER00320.2, xeroderma pigmentosum group C [Hydra vulgaris]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
P51612DNA repair protein complementing XP-C cells homolog OS=Mus musculus OX=10090 GN=Xpc PE=1 SV=2
Q01831DNA repair protein complementing XP-C cells OS=Homo sapiens OX=9606 GN=XPC PE=1 SV=4
Q24595DNA repair protein complementing XP-C cells homolog OS=Drosophila melanogaster OX=7227 GN=Xpc PE=1 SV=2

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF10403BHD_1Rad4 beta-hairpin domain 1DomainInterproscan
PF10405BHD_3Rad4 beta-hairpin domain 3DomainInterproscan
PF10404BHD_2Rad4 beta-hairpin domain 2DomainInterproscan
PF01253SUI1Translation initiation factor SUI1DomainInterproscan
PF03835Rad4Rad4 transglutaminase-like domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR018328DomainRad4 beta-hairpin domain 3Interproscan
IPR036985Homologous_superfamilyTransglutaminase-like superfamilyInterproscan
IPR038765Homologous_superfamilyPapain-like cysteine peptidase superfamilyInterproscan
IPR004583FamilyDNA repair protein Rad4Interproscan
IPR018326DomainRad4 beta-hairpin domain 1Interproscan
IPR018327DomainRad4 beta-hairpin domain 2Interproscan
IPR001950DomainSUI1 domainInterproscan
IPR042488Homologous_superfamilyRad4, beta-hairpin domain 3 superfamilyInterproscan
IPR036877Homologous_superfamilySUI1 domain superfamilyInterproscan
IPR018026FamilyDNA repair protein Rad4-likeInterproscan
IPR018325DomainRad4/PNGase transglutaminase-like foldInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR12135DNA REPAIR PROTEIN XP-C / RAD4Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0000111Cellular Componentnucleotide-excision repair factor 2 complexInterproscan
GO:0003684Molecular Functiondamaged DNA bindingInterproscan
GO:0003697Molecular Functionsingle-stranded DNA bindingInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0006289Biological Processnucleotide-excision repairInterproscan
GO:0006298Biological Processmismatch repairInterproscan
GO:0071942Cellular ComponentXPC complexInterproscan
GO:0003743Molecular Functiontranslation initiation factor activityInterproscan
GO:0006413Biological Processtranslational initiationInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K10838XPC; xeroderma pigmentosum group C-complementing protein-DNA repair and recombination proteinsko03400deepkoala

TOP