Detailed information of HSymV2.0_g14.24500_t1 in Hydractinia symbiolongicarpus

Genomic Location: HiC_scaffold_14:13937559...13976505
NR annotation: XP_022248845.1, nuclear factor NF-kappa-B p105 subunit-like isoform X3 [Limulus polyphemus]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Gene family
Gene familySubfamily
Transcription Factors FamilyRHD

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00554RHD_DNA_bindRel homology DNA-binding domainDomainInterproscan
PF16179RHD_dimerRel homology dimerisation domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR037059Homologous_superfamilyRel homology domain (RHD), DNA-binding domain superfamilyInterproscan
IPR011539DomainRel homology domain, DNA-binding domainInterproscan
IPR000451FamilyNF-kappa-B/DorsalInterproscan
IPR008967Homologous_superfamilyp53-like transcription factor, DNA-binding domain superfamilyInterproscan
IPR013783Homologous_superfamilyImmunoglobulin-like foldInterproscan
IPR032397DomainRel homology dimerisation domainInterproscan
IPR014756Homologous_superfamilyImmunoglobulin E-setInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR24169NUCLEAR FACTOR NF-KAPPA-B PROTEINInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0003700Molecular FunctionDNA-binding transcription factor activityInterproscan
GO:0006355Biological Processregulation of DNA-templated transcriptionInterproscan
GO:0000978Molecular FunctionRNA polymerase II cis-regulatory region sequence-specific DNA bindingInterproscan
GO:0000981Molecular FunctionDNA-binding transcription factor activity, RNA polymerase II-specificInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0006954Biological Processinflammatory responseInterproscan
GO:0007249Biological Processcanonical NF-kappaB signal transductionInterproscan
GO:0033554Biological Processcellular response to stressInterproscan
GO:0034097Biological Processresponse to cytokineInterproscan
GO:0038061Biological Processnon-canonical NF-kappaB signal transductionInterproscan
GO:0045087Biological Processinnate immune responseInterproscan
GO:0045944Biological Processpositive regulation of transcription by RNA polymerase IIInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K09254REL; c-Rel proto-oncogene protein-Transcription factorsko03000deepkoala

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