Gene detail

Detailed information of HSymV2.0_g14.24504_t1 in Hydractinia symbiolongicarpus

Genomic Location: HiC_scaffold_14:13981683...14001202
NR annotation: XP_047122781.1, RNA-binding protein 10 [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

HSymV2.0_g14.24504_t1

atgacaagCATGAATAATTATAATGGAATGATAACCATGTATGAAGGAACTAGCAATAGAACTAGACAACATGAATATGCACCAGGTTACTCTGCAGCCAGCCATGAATATAAGGATTATCAAAATCGATCCAGATCCCCAAGAGATCATTCTCCTAGAAGAAAATCAAATCGGTCTCTATCTCCACTAATAAATCAACGTGTTTACGATGGCTTTGTTTGTGATGATAAAAACAGTTACAGCAGTTTTCCACAGGATAATTATAATAAGAATTCCAGTAGAGACAGTGAAAGAGATGATCGTAGTTATCGAGACACTAACAAAGATCACCGTAGTGATGAAAGGAGATATGGAAGAGATAGAAGACGTTCTCGGTCAAGAGATAGATCGCGTTCATCAAGAGATGGCAGAGAACGACGTGACACTTCAAGAGAACGTAGAAACTCGGATGAGGATCGCTATAGTGACCGATCTGGGAGAAAGCAACAAGATAGGGAATATGGCTACCGTAGTTCAGATGTATATAAATATGATTCCAATCCTTCATCAACAGTTATTGTGCAAAATTTAGGACTGGAAGCAACGGAGCAGAAGATCGAAGATCATTTGCGTTTAAGTGGAGTTGTTGCAAATCATGTTGCTATAATACGTGACCGAAATAATGGCAAGAGTAAAGGATATGGATTTGTGGAATTTAATGATGTTGACACAGCAGAGAAGTGGCTAAACTTGACAAAAAGACGTATTATTATTGATGGTCGACCTGTTCAATTAGACTTTAGCAAGTCAAAGAAAAGTGAATTGTCTTCCTCTCCATCTGTTATTCCTGATTGGAACTGTTTTCAGTGCAATGCTGTAAATTTTGGAAGTCGCAAAAGACATGAAAAACAAGTGACGTGTTTTCGCTGTGGTGTAGTGCAAAACGATGAGAACAGTCAGTATAGTAAACAGCAAACGAAGGAACGTAGCAGTAGTGACATCTTGAATCTGGAACCCTGCAATGTTTTAATGATACGTGGCATGGCATTTTCAACAACTGAAGACGAAATTCGCTACGCTATCACAAAGCTCACCACAAGAGCTGTTTACGATGTCCGACTGATAAAAGATAAAGTTACTAATATGTCACGTGGTTTTGCTTTTGTTGAGCTCGGAAACGTAGAGGATGCAAGTGAACTTCTTGAAAAAATAGAACATTCTGATTTTCCATTCGAGATTGATAATCGCAGGATATCTGCTGGTTATGCTAGGCATGGATTTGCTGCACCCCCGAGTAGCAAGAAGGGAAGGTCCAGCTTGGTAAGCAATAAAACTGCTGCAGAAAATGCTGTTGCTCAAGCTTCTGCGGCACAAGCTACTGCTGAGTACTCCCAAAGTATGGCTGATTTATACATGTCGACAGGTGCAGTTAAACAATCATATAACACTACAGGACAACAAACTGGCCAAGCTCCTCAACCTGTCTCCTCATATGTATACGATCCGACTTCTGGGTATTATTACGACTCAAGTACAGGTTTATATTACGACGCTAATACTGGGtattATTACAACGGCACCACTGGTCAATTTCTGTATTGGAACGGTAGTAAATATCAAGTTGTAAACTCAGACGGCACGATTTCTGCTGATGCTACTAACACTAACGTCACAGCACAGCCTGAACAAAAAAACGAAAGCTCAGAAAAAGAAAAAGTAAATATCTCTGGTCAAAAGCCAAAGAATGCTCGAAAGATCGCCAAAGATATGGAACGCTGGGCGAAGAAAATGAACACCGCGACTGAAGCGAAAAAAACTGCAGTGAAACAAGCGCAAGATGAATTGAGAGCGCTCGAACAAAAAGAAGAAGAGCTTCGTAAACAAATTGTGCAAGAAAAAGCGGTCACTAGTATTTTAGGACAAGTTGCGGCCAACAAGGATGGTATCCGTTCTCTGTTCGTACCTGATGATGAAGACGAAGTTTCGGTGTTACAACTTGGATCGTCCCTGTCGTCAAATAGCTCCACAAAGCTGGGCTCCAATGTAATTGCGGCGACTGATTTACCGGAAGATGATGATGATGATTTTGTCGACGAAACCAAATTTGTTGATCAAGTTAAAATGGCTTGCTTGCTTTGTAAACGACAATTTCCGAGTAAAGAAGTGCTGACGAAGCATTTGCAAATATCGCAACTCCATCAGCAAAATTTGGAGAAGTACCAATCGTCAAGAAAGACTTGA

Transcript

HSymV2.0_g14.24504_t1

Protein

Uniprot

Uniprot term	Description
Q1RMU5	RNA-binding protein 5 OS=Bos taurus OX=9913 GN=RBM5 PE=2 SV=1
Q91YE7	RNA-binding protein 5 OS=Mus musculus OX=10090 GN=Rbm5 PE=1 SV=1
P52756	RNA-binding protein 5 OS=Homo sapiens OX=9606 GN=RBM5 PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF17780	OCRE	OCRE domain	Domain	Interproscan
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR041591	Domain	OCRE domain	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13948	RNA-BINDING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0000398	Biological Process	mRNA splicing, via spliceosome	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K13094	RBM5_10; RNA-binding protein 5/10	-	Spliceosome	ko03041	deepkoala